Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00871 and SMc00870 are separated by 84 nucleotides SMc00870 and SMc00869 are separated by 73 nucleotides SMc00869 and SMc00868 are separated by 13 nucleotides SMc00868 and SMc00867 are separated by 390 nucleotides
SMc00871: SMc00871 - F0F1 ATP synthase subunit A, at 916,938 to 917,690
SMc00871
SMc00870: SMc00870 - F0F1 ATP synthase subunit C, at 917,775 to 918,002
SMc00870
SMc00869: SMc00869 - F0F1 ATP synthase subunit B', at 918,076 to 918,690
SMc00869
SMc00868: SMc00868 - F0F1 ATP synthase subunit B, at 918,704 to 919,189
SMc00868
SMc00867: SMc00867 - ribonuclease HII, at 919,580 to 920,230
SMc00867
Position (kb)
918
919 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 917.688 kb on + strand at 919.188 kb on - strand at 919.194 kb on - strand at 919.204 kb on - strand at 919.272 kb on + strand at 919.273 kb on - strand at 919.345 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.467 kb on + strand at 919.468 kb on - strand at 919.468 kb on - strand at 919.468 kb on - strand at 919.468 kb on - strand at 919.468 kb on - strand at 919.469 kb on + strand at 919.469 kb on + strand at 919.469 kb on + strand at 919.469 kb on + strand at 919.470 kb on - strand at 919.470 kb on - strand at 919.500 kb on + strand at 919.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 917,688 + +2.2 919,188 - -0.3 919,194 - -0.1 919,204 - +0.1 919,272 + -0.7 919,273 - +0.2 919,345 + -0.6 919,467 + +0.1 919,467 + +0.0 919,467 + -0.6 919,467 + -0.5 919,467 + +0.5 919,467 + -1.4 919,467 + +0.0 919,468 - +0.3 919,468 - +0.1 919,468 - -0.2 919,468 - +0.3 919,468 - +0.2 919,469 + +1.9 919,469 + -1.1 919,469 + +0.4 919,469 + -0.8 919,470 - +0.4 919,470 - +0.2 919,500 + -3.4 919,500 + -0.5
Or see this region's nucleotide sequence