Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00471 and SMc00470 are separated by 366 nucleotides SMc00470 and SMc00469 are separated by 92 nucleotides SMc00469 and SMc00468 are separated by 386 nucleotides
SMc00471: SMc00471 - sensor histidine kinase transmembrane protein, at 1,952,055 to 1,954,664
SMc00471
SMc00470: SMc00470 - hypothetical protein, at 1,955,031 to 1,955,996
SMc00470
SMc00469: SMc00469 - DnaK suppressor protein, at 1,956,089 to 1,956,529
SMc00469
SMc00468: SMc00468 - hypothetical protein, at 1,956,916 to 1,957,452
SMc00468
Position (kb)
1955
1956 Strain fitness (log2 ratio)
-1
0
1
2 at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.779 kb on - strand at 1954.905 kb on - strand at 1954.905 kb on - strand at 1955.030 kb on + strand at 1955.596 kb on + strand, within SMc00470 at 1955.718 kb on - strand, within SMc00470 at 1955.718 kb on - strand, within SMc00470 at 1955.973 kb on - strand at 1955.994 kb on + strand at 1956.002 kb on - strand at 1956.002 kb on - strand at 1956.066 kb on + strand at 1956.554 kb on - strand at 1956.554 kb on - strand at 1956.634 kb on - strand at 1956.913 kb on + strand at 1956.913 kb on + strand at 1956.913 kb on + strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,954,724 - +0.9 1,954,724 - -0.4 1,954,724 - +0.7 1,954,724 - +1.0 1,954,724 - +1.6 1,954,724 - +0.2 1,954,779 - -0.9 1,954,905 - +0.6 1,954,905 - +0.3 1,955,030 + -0.5 1,955,596 + SMc00470 0.58 -1.0 1,955,718 - SMc00470 0.71 -0.2 1,955,718 - SMc00470 0.71 -1.2 1,955,973 - -0.7 1,955,994 + +0.3 1,956,002 - -0.4 1,956,002 - +0.7 1,956,066 + -0.2 1,956,554 - -0.2 1,956,554 - +0.8 1,956,634 - +1.8 1,956,913 + -0.3 1,956,913 + -0.6 1,956,913 + -1.5 1,956,914 - +0.6 1,956,914 - +1.0 1,956,914 - +0.5 1,956,914 - -0.3 1,956,914 - +1.1 1,956,914 - +1.1
Or see this region's nucleotide sequence