Strain Fitness in Sinorhizobium meliloti 1021 around SMc00470

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00471 and SMc00470 are separated by 366 nucleotidesSMc00470 and SMc00469 are separated by 92 nucleotidesSMc00469 and SMc00468 are separated by 386 nucleotides SMc00471: SMc00471 - sensor histidine kinase transmembrane protein, at 1,952,055 to 1,954,664 SMc00471 SMc00470: SMc00470 - hypothetical protein, at 1,955,031 to 1,955,996 SMc00470 SMc00469: SMc00469 - DnaK suppressor protein, at 1,956,089 to 1,956,529 SMc00469 SMc00468: SMc00468 - hypothetical protein, at 1,956,916 to 1,957,452 SMc00468 Position (kb) 1955 1956Strain fitness (log2 ratio) -1 0 1 2at 1954.724 kb on - strandat 1954.724 kb on - strandat 1954.724 kb on - strandat 1954.724 kb on - strandat 1954.724 kb on - strandat 1954.724 kb on - strandat 1954.779 kb on - strandat 1954.905 kb on - strandat 1954.905 kb on - strandat 1955.030 kb on + strandat 1955.596 kb on + strand, within SMc00470at 1955.718 kb on - strand, within SMc00470at 1955.718 kb on - strand, within SMc00470at 1955.973 kb on - strandat 1955.994 kb on + strandat 1956.002 kb on - strandat 1956.002 kb on - strandat 1956.066 kb on + strandat 1956.554 kb on - strandat 1956.554 kb on - strandat 1956.634 kb on - strandat 1956.913 kb on + strandat 1956.913 kb on + strandat 1956.913 kb on + strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,954,724 - +0.9
1,954,724 - -0.4
1,954,724 - +0.7
1,954,724 - +1.0
1,954,724 - +1.6
1,954,724 - +0.2
1,954,779 - -0.9
1,954,905 - +0.6
1,954,905 - +0.3
1,955,030 + -0.5
1,955,596 + SMc00470 0.58 -1.0
1,955,718 - SMc00470 0.71 -0.2
1,955,718 - SMc00470 0.71 -1.2
1,955,973 - -0.7
1,955,994 + +0.3
1,956,002 - -0.4
1,956,002 - +0.7
1,956,066 + -0.2
1,956,554 - -0.2
1,956,554 - +0.8
1,956,634 - +1.8
1,956,913 + -0.3
1,956,913 + -0.6
1,956,913 + -1.5
1,956,914 - +0.6
1,956,914 - +1.0
1,956,914 - +0.5
1,956,914 - -0.3
1,956,914 - +1.1
1,956,914 - +1.1

Or see this region's nucleotide sequence