Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1573 and SMa1576 are separated by 6 nucleotides SMa1576 and SMa1578 are separated by 42 nucleotides SMa1578 and SMa1579 are separated by 259 nucleotides
SMa1573: SMa1573 - CpaE2 pilus assembly protein, at 869,830 to 871,590
SMa1573
SMa1576: SMa1576 - CpaB2 pilus assembly protein, at 871,597 to 872,388
SMa1576
SMa1578: SMa1578 - CpaA2 pilus assembly protein, at 872,431 to 872,943
SMa1578
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
Position (kb) 871
872
873 Strain fitness (log2 ratio) -2
-1
0
1
2 at 870.706 kb on + strand, within SMa1573 at 870.872 kb on + strand, within SMa1573 at 870.872 kb on + strand, within SMa1573 at 870.873 kb on - strand, within SMa1573 at 871.040 kb on + strand, within SMa1573 at 871.040 kb on + strand, within SMa1573 at 871.041 kb on - strand, within SMa1573 at 871.041 kb on - strand, within SMa1573 at 871.191 kb on - strand, within SMa1573 at 871.223 kb on + strand, within SMa1573 at 871.223 kb on + strand, within SMa1573 at 871.360 kb on + strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.361 kb on - strand, within SMa1573 at 871.371 kb on - strand, within SMa1573 at 871.411 kb on + strand, within SMa1573 at 871.508 kb on - strand at 871.508 kb on - strand at 871.717 kb on - strand, within SMa1576 at 871.880 kb on - strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 872.048 kb on + strand, within SMa1576 at 872.110 kb on + strand, within SMa1576 at 872.111 kb on - strand, within SMa1576 at 872.379 kb on + strand at 872.433 kb on - strand at 872.502 kb on - strand, within SMa1578 at 872.508 kb on + strand, within SMa1578 at 872.572 kb on + strand, within SMa1578 at 872.572 kb on + strand at 872.628 kb on - strand, within SMa1578 at 872.851 kb on + strand, within SMa1578 at 872.886 kb on - strand, within SMa1578 at 873.040 kb on - strand at 873.114 kb on + strand at 873.114 kb on + strand at 873.115 kb on - strand at 873.365 kb on + strand, within SMa1579
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 870,706 + SMa1573 0.50 -0.2 870,872 + SMa1573 0.59 -0.6 870,872 + SMa1573 0.59 -0.8 870,873 - SMa1573 0.59 +0.2 871,040 + SMa1573 0.69 +0.3 871,040 + SMa1573 0.69 -1.9 871,041 - SMa1573 0.69 -0.6 871,041 - SMa1573 0.69 +0.1 871,191 - SMa1573 0.77 +0.0 871,223 + SMa1573 0.79 -0.5 871,223 + SMa1573 0.79 +0.6 871,360 + SMa1573 0.87 +0.1 871,361 - SMa1573 0.87 +0.1 871,361 - SMa1573 0.87 -0.2 871,361 - SMa1573 0.87 +0.7 871,371 - SMa1573 0.88 +0.7 871,411 + SMa1573 0.90 -0.2 871,508 - -1.3 871,508 - +0.1 871,717 - SMa1576 0.15 +0.3 871,880 - SMa1576 0.36 +0.1 871,944 + SMa1576 0.44 -0.4 871,944 + SMa1576 0.44 -1.3 872,048 + SMa1576 0.57 -0.3 872,110 + SMa1576 0.65 +0.2 872,111 - SMa1576 0.65 -0.2 872,379 + -0.2 872,433 - +1.3 872,502 - SMa1578 0.14 +1.8 872,508 + SMa1578 0.15 -0.5 872,572 + SMa1578 0.27 -0.7 872,572 + +0.5 872,628 - SMa1578 0.38 +0.1 872,851 + SMa1578 0.82 -0.4 872,886 - SMa1578 0.89 -0.0 873,040 - -0.6 873,114 + -0.2 873,114 + -0.8 873,115 - +0.8 873,365 + SMa1579 0.12 +0.3
Or see this region's nucleotide sequence