Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1455 and SMa1456 overlap by 4 nucleotides SMa1456 and SMa1459 are separated by 107 nucleotides SMa1459 and SMa1461 overlap by 4 nucleotides
SMa1454: SMa1454 - AraC family transcriptional regulator, at 801,299 to 802,342
SMa1454
SMa1455: SMa1455 - hypothetical protein, at 802,324 to 802,842
SMa1455
SMa1456: SMa1456 - hypothetical protein, at 802,839 to 803,228
SMa1456
SMa1459: SMa1459 - Dehydrogenase, malate/L-lactate family, at 803,336 to 804,340
SMa1459
SMa1461: SMa1461 - muconate cycloisomerase, at 804,337 to 805,461
SMa1461
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1 at 802.347 kb on + strand at 802.370 kb on + strand at 802.370 kb on + strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.637 kb on + strand, within SMa1455 at 802.637 kb on + strand, within SMa1455 at 802.638 kb on - strand, within SMa1455 at 802.722 kb on - strand, within SMa1455 at 803.176 kb on + strand, within SMa1456 at 803.176 kb on + strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.229 kb on - strand at 803.250 kb on + strand at 803.338 kb on - strand at 803.645 kb on - strand, within SMa1459 at 803.846 kb on + strand, within SMa1459 at 803.939 kb on - strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.532 kb on - strand, within SMa1461 at 804.691 kb on + strand, within SMa1461 at 804.821 kb on + strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 805.046 kb on + strand, within SMa1461 at 805.047 kb on - strand, within SMa1461 at 805.052 kb on + strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.177 kb on - strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.197 kb on - strand, within SMa1461
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 802,347 + -0.3 802,370 + -0.0 802,370 + -0.3 802,371 - -0.1 802,371 - +0.9 802,371 - -0.5 802,637 + SMa1455 0.60 -0.2 802,637 + SMa1455 0.60 -0.7 802,638 - SMa1455 0.61 +0.0 802,722 - SMa1455 0.77 +0.2 803,176 + SMa1456 0.86 -0.1 803,176 + SMa1456 0.86 +0.1 803,177 - SMa1456 0.87 -0.2 803,177 - SMa1456 0.87 -0.3 803,177 - SMa1456 0.87 -0.2 803,177 - SMa1456 0.87 -0.8 803,229 - -1.1 803,250 + -1.4 803,338 - +0.5 803,645 - SMa1459 0.31 +0.7 803,846 + SMa1459 0.51 -0.8 803,939 - SMa1459 0.60 -0.2 803,989 + SMa1459 0.65 -0.1 803,989 + SMa1459 0.65 -0.2 803,991 + SMa1459 0.65 -0.2 803,991 + SMa1459 0.65 -0.7 803,992 - SMa1459 0.65 +0.6 803,992 - SMa1459 0.65 -0.1 803,992 - SMa1459 0.65 +1.1 804,190 - SMa1459 0.85 +0.0 804,190 - SMa1459 0.85 -2.1 804,192 + SMa1459 0.85 -0.0 804,192 + SMa1459 0.85 +0.3 804,532 - SMa1461 0.17 +0.2 804,691 + SMa1461 0.31 +0.7 804,821 + SMa1461 0.43 +0.5 804,969 - SMa1461 0.56 +0.4 804,969 - SMa1461 0.56 -0.1 805,046 + SMa1461 0.63 +1.6 805,047 - SMa1461 0.63 -0.2 805,052 + SMa1461 0.64 -1.3 805,132 - SMa1461 0.71 -0.1 805,132 - SMa1461 0.71 +0.2 805,177 - SMa1461 0.75 -0.1 805,196 + SMa1461 0.76 -0.1 805,196 + SMa1461 0.76 +0.3 805,197 - SMa1461 0.76 +0.1
Or see this region's nucleotide sequence