Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1430 and SMa1431 are separated by 47 nucleotides SMa1431 and SMa1434 are separated by 172 nucleotides SMa1434 and SMa1435 overlap by 4 nucleotides SMa1435 and SMa1437 are separated by 12 nucleotides
SMa1430: SMa1430 - Dehydrogenase, Zn-dependent, at 787,459 to 788,475
SMa1430
SMa1431: SMa1431 - hypothetical protein, at 788,523 to 789,041
SMa1431
SMa1434: SMa1434 - ABC transporter ATP-binding protein, at 789,214 to 790,866
SMa1434
SMa1435: SMa1435 - ABC transporter permease, at 790,863 to 791,780
SMa1435
SMa1437: SMa1437 - ABC transporter permease, at 791,793 to 792,707
SMa1437
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 788.260 kb on - strand, within SMa1430 at 788.373 kb on + strand, within SMa1430 at 788.423 kb on + strand at 788.423 kb on + strand at 788.423 kb on + strand at 788.461 kb on + strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.573 kb on - strand at 788.573 kb on - strand at 788.595 kb on + strand, within SMa1431 at 788.595 kb on + strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.633 kb on - strand, within SMa1431 at 788.774 kb on + strand, within SMa1431 at 788.815 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 789.078 kb on - strand at 789.215 kb on + strand at 789.216 kb on - strand at 789.287 kb on + strand at 789.287 kb on + strand at 789.288 kb on - strand at 789.288 kb on - strand at 789.694 kb on + strand, within SMa1434 at 789.694 kb on + strand, within SMa1434 at 789.695 kb on - strand, within SMa1434 at 789.880 kb on - strand, within SMa1434 at 789.995 kb on + strand, within SMa1434 at 789.995 kb on + strand, within SMa1434 at 790.171 kb on + strand, within SMa1434 at 790.171 kb on + strand, within SMa1434 at 790.330 kb on - strand, within SMa1434 at 790.401 kb on - strand, within SMa1434 at 790.532 kb on + strand, within SMa1434 at 790.532 kb on + strand, within SMa1434 at 790.533 kb on - strand, within SMa1434 at 791.015 kb on - strand, within SMa1435 at 791.037 kb on - strand, within SMa1435 at 791.330 kb on + strand, within SMa1435 at 791.331 kb on - strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.333 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.560 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.683 kb on - strand, within SMa1435 at 791.754 kb on + strand at 791.755 kb on - strand at 791.824 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 788,260 - SMa1430 0.79 -1.2 788,373 + SMa1430 0.90 +0.0 788,423 + -0.2 788,423 + +3.1 788,423 + -0.4 788,461 + -0.5 788,462 - -0.6 788,462 - +0.2 788,462 - -0.1 788,573 - -0.3 788,573 - +0.5 788,595 + SMa1431 0.14 -0.2 788,595 + SMa1431 0.14 -0.2 788,596 - SMa1431 0.14 -0.4 788,596 - SMa1431 0.14 -0.4 788,596 - SMa1431 0.14 -2.4 788,633 - SMa1431 0.21 +0.4 788,774 + SMa1431 0.48 +0.7 788,815 + SMa1431 0.56 -0.1 788,862 + SMa1431 0.65 -0.3 788,862 + SMa1431 0.65 +0.7 788,862 + SMa1431 0.65 -0.5 789,078 - -0.0 789,215 + +0.6 789,216 - +0.3 789,287 + +0.1 789,287 + +0.3 789,288 - +0.5 789,288 - +0.0 789,694 + SMa1434 0.29 +0.4 789,694 + SMa1434 0.29 +0.1 789,695 - SMa1434 0.29 +0.1 789,880 - SMa1434 0.40 +1.0 789,995 + SMa1434 0.47 +0.1 789,995 + SMa1434 0.47 -0.2 790,171 + SMa1434 0.58 -0.7 790,171 + SMa1434 0.58 +0.0 790,330 - SMa1434 0.68 +0.8 790,401 - SMa1434 0.72 +1.1 790,532 + SMa1434 0.80 -0.2 790,532 + SMa1434 0.80 +0.5 790,533 - SMa1434 0.80 +0.0 791,015 - SMa1435 0.17 +1.1 791,037 - SMa1435 0.19 -0.6 791,330 + SMa1435 0.51 +0.1 791,331 - SMa1435 0.51 -1.9 791,332 + SMa1435 0.51 -0.5 791,332 + SMa1435 0.51 -0.2 791,333 - SMa1435 0.51 +0.0 791,406 - SMa1435 0.59 -0.4 791,406 - SMa1435 0.59 -0.3 791,406 - SMa1435 0.59 -0.4 791,407 + SMa1435 0.59 +0.3 791,407 + SMa1435 0.59 +0.1 791,422 + SMa1435 0.61 +1.1 791,422 + SMa1435 0.61 -0.0 791,560 + SMa1435 0.76 +0.2 791,682 + SMa1435 0.89 +0.1 791,682 + SMa1435 0.89 +0.4 791,683 - SMa1435 0.89 -0.2 791,754 + +0.5 791,755 - -0.2 791,824 + +0.8
Or see this region's nucleotide sequence