Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21461

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21460 and SM_b21461 are separated by 88 nucleotidesSM_b21461 and SM_b21462 are separated by 35 nucleotidesSM_b21462 and SM_b21463 overlap by 10 nucleotides SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262 _b21460 SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613 _b21461 SM_b21462: SM_b21462 - sugar kinase, at 1,388,649 to 1,389,584 _b21462 SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960 _b21463 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -2 -1 0 1 2at 1386.467 kb on - strand, within SM_b21460at 1386.509 kb on + strand, within SM_b21460at 1386.509 kb on + strand, within SM_b21460at 1386.551 kb on + strand, within SM_b21460at 1386.551 kb on + strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.599 kb on - strandat 1386.599 kb on - strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.995 kb on + strand, within SM_b21460at 1387.216 kb on + strandat 1387.217 kb on - strandat 1387.217 kb on - strandat 1387.217 kb on - strandat 1387.471 kb on - strandat 1387.472 kb on + strandat 1387.472 kb on + strandat 1387.473 kb on - strandat 1387.473 kb on - strandat 1387.473 kb on - strandat 1387.473 kb on - strandat 1387.473 kb on - strandat 1387.575 kb on - strand, within SM_b21461at 1387.575 kb on - strand, within SM_b21461at 1387.644 kb on + strand, within SM_b21461at 1387.646 kb on + strand, within SM_b21461at 1387.647 kb on - strand, within SM_b21461at 1387.647 kb on - strand, within SM_b21461at 1387.647 kb on - strand, within SM_b21461at 1387.647 kb on - strand, within SM_b21461at 1387.703 kb on + strand, within SM_b21461at 1387.774 kb on - strand, within SM_b21461at 1387.774 kb on - strand, within SM_b21461at 1387.818 kb on - strand, within SM_b21461at 1387.818 kb on - strand, within SM_b21461at 1387.846 kb on - strand, within SM_b21461at 1387.883 kb on + strand, within SM_b21461at 1387.883 kb on + strand, within SM_b21461at 1387.884 kb on - strand, within SM_b21461at 1388.048 kb on + strand, within SM_b21461at 1388.049 kb on - strand, within SM_b21461at 1388.070 kb on - strand, within SM_b21461at 1388.169 kb on - strand, within SM_b21461at 1388.192 kb on + strand, within SM_b21461at 1388.193 kb on - strand, within SM_b21461at 1388.216 kb on + strand, within SM_b21461at 1388.216 kb on + strand, within SM_b21461at 1388.216 kb on + strand, within SM_b21461at 1388.217 kb on - strand, within SM_b21461at 1388.217 kb on - strand, within SM_b21461at 1388.358 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.360 kb on + strand, within SM_b21461at 1388.361 kb on - strand, within SM_b21461at 1388.361 kb on - strand, within SM_b21461at 1388.361 kb on - strand, within SM_b21461at 1388.361 kb on - strand, within SM_b21461at 1388.405 kb on + strand, within SM_b21461at 1388.405 kb on + strand, within SM_b21461at 1388.508 kb on - strandat 1388.604 kb on + strandat 1388.604 kb on + strandat 1388.604 kb on + strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.605 kb on - strandat 1388.651 kb on - strandat 1388.651 kb on - strandat 1388.651 kb on - strandat 1388.653 kb on - strandat 1388.653 kb on - strandat 1388.675 kb on - strandat 1388.717 kb on - strandat 1388.835 kb on - strand, within SM_b21462at 1388.916 kb on - strand, within SM_b21462at 1389.090 kb on + strand, within SM_b21462at 1389.091 kb on - strand, within SM_b21462at 1389.091 kb on - strand, within SM_b21462at 1389.168 kb on + strand, within SM_b21462at 1389.169 kb on - strand, within SM_b21462at 1389.229 kb on + strand, within SM_b21462at 1389.363 kb on - strand, within SM_b21462at 1389.523 kb on + strandat 1389.526 kb on + strandat 1389.527 kb on - strandat 1389.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,386,467 - SM_b21460 0.28 -0.4
1,386,509 + SM_b21460 0.32 -0.8
1,386,509 + SM_b21460 0.32 -0.5
1,386,551 + SM_b21460 0.36 +0.5
1,386,551 + SM_b21460 0.36 +0.4
1,386,552 - SM_b21460 0.36 +0.3
1,386,552 - SM_b21460 0.36 -0.5
1,386,552 - SM_b21460 0.36 +0.0
1,386,599 - -0.5
1,386,599 - SM_b21460 0.40 +1.5
1,386,697 + SM_b21460 0.49 -0.0
1,386,697 + SM_b21460 0.49 -1.4
1,386,697 + SM_b21460 0.49 +0.4
1,386,697 + SM_b21460 0.49 -0.1
1,386,697 + SM_b21460 0.49 +0.2
1,386,698 - SM_b21460 0.49 +0.2
1,386,698 - SM_b21460 0.49 +0.3
1,386,698 - SM_b21460 0.49 -1.0
1,386,698 - SM_b21460 0.49 +0.6
1,386,995 + SM_b21460 0.76 -0.4
1,387,216 + +0.5
1,387,217 - -0.5
1,387,217 - +0.1
1,387,217 - +0.0
1,387,471 - -0.6
1,387,472 + +0.3
1,387,472 + +0.2
1,387,473 - -0.2
1,387,473 - -0.6
1,387,473 - -0.3
1,387,473 - -0.1
1,387,473 - -2.7
1,387,575 - SM_b21461 0.18 -0.1
1,387,575 - SM_b21461 0.18 -0.2
1,387,644 + SM_b21461 0.23 +0.1
1,387,646 + SM_b21461 0.23 +0.4
1,387,647 - SM_b21461 0.23 +0.4
1,387,647 - SM_b21461 0.23 -0.3
1,387,647 - SM_b21461 0.23 -1.2
1,387,647 - SM_b21461 0.23 -1.4
1,387,703 + SM_b21461 0.28 -0.3
1,387,774 - SM_b21461 0.33 +0.1
1,387,774 - SM_b21461 0.33 +0.6
1,387,818 - SM_b21461 0.37 -1.6
1,387,818 - SM_b21461 0.37 -0.2
1,387,846 - SM_b21461 0.39 -0.3
1,387,883 + SM_b21461 0.42 -0.3
1,387,883 + SM_b21461 0.42 -0.2
1,387,884 - SM_b21461 0.42 +0.5
1,388,048 + SM_b21461 0.55 +0.4
1,388,049 - SM_b21461 0.55 +0.1
1,388,070 - SM_b21461 0.57 -0.0
1,388,169 - SM_b21461 0.65 -1.6
1,388,192 + SM_b21461 0.67 -0.3
1,388,193 - SM_b21461 0.67 +0.2
1,388,216 + SM_b21461 0.68 -1.1
1,388,216 + SM_b21461 0.68 -1.2
1,388,216 + SM_b21461 0.68 +1.3
1,388,217 - SM_b21461 0.69 -0.3
1,388,217 - SM_b21461 0.69 -0.5
1,388,358 + SM_b21461 0.80 -0.4
1,388,360 + SM_b21461 0.80 -1.0
1,388,360 + SM_b21461 0.80 -0.3
1,388,360 + SM_b21461 0.80 -1.2
1,388,360 + SM_b21461 0.80 -0.3
1,388,360 + SM_b21461 0.80 -0.6
1,388,360 + SM_b21461 0.80 -1.2
1,388,361 - SM_b21461 0.80 +0.3
1,388,361 - SM_b21461 0.80 -0.6
1,388,361 - SM_b21461 0.80 -0.5
1,388,361 - SM_b21461 0.80 -0.4
1,388,405 + SM_b21461 0.83 -0.9
1,388,405 + SM_b21461 0.83 +1.1
1,388,508 - -0.9
1,388,604 + +0.3
1,388,604 + -0.6
1,388,604 + +0.0
1,388,605 - +0.0
1,388,605 - -0.2
1,388,605 - -0.3
1,388,605 - -0.0
1,388,651 - +0.4
1,388,651 - +2.3
1,388,651 - +0.2
1,388,653 - +0.0
1,388,653 - -0.6
1,388,675 - +0.1
1,388,717 - +0.3
1,388,835 - SM_b21462 0.20 +0.2
1,388,916 - SM_b21462 0.29 -0.2
1,389,090 + SM_b21462 0.47 +0.2
1,389,091 - SM_b21462 0.47 -1.4
1,389,091 - SM_b21462 0.47 -0.6
1,389,168 + SM_b21462 0.55 -0.2
1,389,169 - SM_b21462 0.56 -0.6
1,389,229 + SM_b21462 0.62 -0.3
1,389,363 - SM_b21462 0.76 +0.4
1,389,523 + -0.8
1,389,526 + -0.2
1,389,527 - -0.1
1,389,527 - -0.0

Or see this region's nucleotide sequence