Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21460 and SM_b21461 are separated by 88 nucleotides SM_b21461 and SM_b21462 are separated by 35 nucleotides SM_b21462 and SM_b21463 overlap by 10 nucleotides
SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262
_b21460
SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613
_b21461
SM_b21462: SM_b21462 - sugar kinase, at 1,388,649 to 1,389,584
_b21462
SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960
_b21463
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1386.467 kb on - strand, within SM_b21460 at 1386.509 kb on + strand, within SM_b21460 at 1386.509 kb on + strand, within SM_b21460 at 1386.551 kb on + strand, within SM_b21460 at 1386.551 kb on + strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.552 kb on - strand, within SM_b21460 at 1386.599 kb on - strand at 1386.599 kb on - strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.697 kb on + strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.698 kb on - strand, within SM_b21460 at 1386.995 kb on + strand, within SM_b21460 at 1387.216 kb on + strand at 1387.217 kb on - strand at 1387.217 kb on - strand at 1387.217 kb on - strand at 1387.471 kb on - strand at 1387.472 kb on + strand at 1387.472 kb on + strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.473 kb on - strand at 1387.575 kb on - strand, within SM_b21461 at 1387.575 kb on - strand, within SM_b21461 at 1387.644 kb on + strand, within SM_b21461 at 1387.646 kb on + strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.647 kb on - strand, within SM_b21461 at 1387.703 kb on + strand, within SM_b21461 at 1387.774 kb on - strand, within SM_b21461 at 1387.774 kb on - strand, within SM_b21461 at 1387.818 kb on - strand, within SM_b21461 at 1387.818 kb on - strand, within SM_b21461 at 1387.846 kb on - strand, within SM_b21461 at 1387.883 kb on + strand, within SM_b21461 at 1387.883 kb on + strand, within SM_b21461 at 1387.884 kb on - strand, within SM_b21461 at 1388.048 kb on + strand, within SM_b21461 at 1388.049 kb on - strand, within SM_b21461 at 1388.070 kb on - strand, within SM_b21461 at 1388.169 kb on - strand, within SM_b21461 at 1388.192 kb on + strand, within SM_b21461 at 1388.193 kb on - strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.216 kb on + strand, within SM_b21461 at 1388.217 kb on - strand, within SM_b21461 at 1388.217 kb on - strand, within SM_b21461 at 1388.358 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.360 kb on + strand, within SM_b21461 at 1388.361 kb on - strand, within SM_b21461 at 1388.361 kb on - strand, within SM_b21461 at 1388.361 kb on - strand, within SM_b21461 at 1388.361 kb on - strand, within SM_b21461 at 1388.405 kb on + strand, within SM_b21461 at 1388.405 kb on + strand, within SM_b21461 at 1388.508 kb on - strand at 1388.604 kb on + strand at 1388.604 kb on + strand at 1388.604 kb on + strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.605 kb on - strand at 1388.651 kb on - strand at 1388.651 kb on - strand at 1388.651 kb on - strand at 1388.653 kb on - strand at 1388.653 kb on - strand at 1388.675 kb on - strand at 1388.717 kb on - strand at 1388.835 kb on - strand, within SM_b21462 at 1388.916 kb on - strand, within SM_b21462 at 1389.090 kb on + strand, within SM_b21462 at 1389.091 kb on - strand, within SM_b21462 at 1389.091 kb on - strand, within SM_b21462 at 1389.168 kb on + strand, within SM_b21462 at 1389.169 kb on - strand, within SM_b21462 at 1389.229 kb on + strand, within SM_b21462 at 1389.363 kb on - strand, within SM_b21462 at 1389.523 kb on + strand at 1389.526 kb on + strand at 1389.527 kb on - strand at 1389.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,386,467 - SM_b21460 0.28 -0.4 1,386,509 + SM_b21460 0.32 -0.8 1,386,509 + SM_b21460 0.32 -0.5 1,386,551 + SM_b21460 0.36 +0.5 1,386,551 + SM_b21460 0.36 +0.4 1,386,552 - SM_b21460 0.36 +0.3 1,386,552 - SM_b21460 0.36 -0.5 1,386,552 - SM_b21460 0.36 +0.0 1,386,599 - -0.5 1,386,599 - SM_b21460 0.40 +1.5 1,386,697 + SM_b21460 0.49 -0.0 1,386,697 + SM_b21460 0.49 -1.4 1,386,697 + SM_b21460 0.49 +0.4 1,386,697 + SM_b21460 0.49 -0.1 1,386,697 + SM_b21460 0.49 +0.2 1,386,698 - SM_b21460 0.49 +0.2 1,386,698 - SM_b21460 0.49 +0.3 1,386,698 - SM_b21460 0.49 -1.0 1,386,698 - SM_b21460 0.49 +0.6 1,386,995 + SM_b21460 0.76 -0.4 1,387,216 + +0.5 1,387,217 - -0.5 1,387,217 - +0.1 1,387,217 - +0.0 1,387,471 - -0.6 1,387,472 + +0.3 1,387,472 + +0.2 1,387,473 - -0.2 1,387,473 - -0.6 1,387,473 - -0.3 1,387,473 - -0.1 1,387,473 - -2.7 1,387,575 - SM_b21461 0.18 -0.1 1,387,575 - SM_b21461 0.18 -0.2 1,387,644 + SM_b21461 0.23 +0.1 1,387,646 + SM_b21461 0.23 +0.4 1,387,647 - SM_b21461 0.23 +0.4 1,387,647 - SM_b21461 0.23 -0.3 1,387,647 - SM_b21461 0.23 -1.2 1,387,647 - SM_b21461 0.23 -1.4 1,387,703 + SM_b21461 0.28 -0.3 1,387,774 - SM_b21461 0.33 +0.1 1,387,774 - SM_b21461 0.33 +0.6 1,387,818 - SM_b21461 0.37 -1.6 1,387,818 - SM_b21461 0.37 -0.2 1,387,846 - SM_b21461 0.39 -0.3 1,387,883 + SM_b21461 0.42 -0.3 1,387,883 + SM_b21461 0.42 -0.2 1,387,884 - SM_b21461 0.42 +0.5 1,388,048 + SM_b21461 0.55 +0.4 1,388,049 - SM_b21461 0.55 +0.1 1,388,070 - SM_b21461 0.57 -0.0 1,388,169 - SM_b21461 0.65 -1.6 1,388,192 + SM_b21461 0.67 -0.3 1,388,193 - SM_b21461 0.67 +0.2 1,388,216 + SM_b21461 0.68 -1.1 1,388,216 + SM_b21461 0.68 -1.2 1,388,216 + SM_b21461 0.68 +1.3 1,388,217 - SM_b21461 0.69 -0.3 1,388,217 - SM_b21461 0.69 -0.5 1,388,358 + SM_b21461 0.80 -0.4 1,388,360 + SM_b21461 0.80 -1.0 1,388,360 + SM_b21461 0.80 -0.3 1,388,360 + SM_b21461 0.80 -1.2 1,388,360 + SM_b21461 0.80 -0.3 1,388,360 + SM_b21461 0.80 -0.6 1,388,360 + SM_b21461 0.80 -1.2 1,388,361 - SM_b21461 0.80 +0.3 1,388,361 - SM_b21461 0.80 -0.6 1,388,361 - SM_b21461 0.80 -0.5 1,388,361 - SM_b21461 0.80 -0.4 1,388,405 + SM_b21461 0.83 -0.9 1,388,405 + SM_b21461 0.83 +1.1 1,388,508 - -0.9 1,388,604 + +0.3 1,388,604 + -0.6 1,388,604 + +0.0 1,388,605 - +0.0 1,388,605 - -0.2 1,388,605 - -0.3 1,388,605 - -0.0 1,388,651 - +0.4 1,388,651 - +2.3 1,388,651 - +0.2 1,388,653 - +0.0 1,388,653 - -0.6 1,388,675 - +0.1 1,388,717 - +0.3 1,388,835 - SM_b21462 0.20 +0.2 1,388,916 - SM_b21462 0.29 -0.2 1,389,090 + SM_b21462 0.47 +0.2 1,389,091 - SM_b21462 0.47 -1.4 1,389,091 - SM_b21462 0.47 -0.6 1,389,168 + SM_b21462 0.55 -0.2 1,389,169 - SM_b21462 0.56 -0.6 1,389,229 + SM_b21462 0.62 -0.3 1,389,363 - SM_b21462 0.76 +0.4 1,389,523 + -0.8 1,389,526 + -0.2 1,389,527 - -0.1 1,389,527 - -0.0
Or see this region's nucleotide sequence