Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21180 and SM_b21181 are separated by 187 nucleotides SM_b21181 and SM_b21182 are separated by 11 nucleotides
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
SM_b21182: SM_b21182 - hypothetical protein, at 929,179 to 930,363
_b21182
Position (kb) 927
928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181 at 929.096 kb on + strand at 929.096 kb on + strand at 929.369 kb on - strand, within SM_b21182 at 929.506 kb on + strand, within SM_b21182 at 929.519 kb on - strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.555 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.700 kb on + strand, within SM_b21182 at 929.701 kb on - strand, within SM_b21182 at 929.887 kb on - strand, within SM_b21182 at 930.083 kb on - strand, within SM_b21182 at 930.159 kb on - strand, within SM_b21182
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 927,188 + SM_b21180 0.37 -1.9 927,188 + SM_b21180 0.37 +0.1 927,189 - SM_b21180 0.37 +0.0 927,257 + SM_b21180 0.44 +0.0 927,257 + SM_b21180 0.44 -1.0 927,308 - SM_b21180 0.49 -0.2 927,815 + +1.2 927,816 - -1.2 927,820 + -0.3 927,821 - +1.6 927,827 - -0.2 927,975 + +2.8 927,975 + +2.8 927,976 - +3.1 927,976 - +1.7 927,976 - +2.0 928,077 - +1.7 928,077 - +2.3 928,196 + SM_b21181 0.18 +2.8 928,196 + SM_b21181 0.18 +2.6 928,196 + SM_b21181 0.18 +2.9 928,197 - SM_b21181 0.18 +2.9 928,217 + SM_b21181 0.20 +2.3 928,217 + SM_b21181 0.20 +3.2 928,217 + SM_b21181 0.20 +2.5 928,227 - SM_b21181 0.21 +2.2 928,307 + SM_b21181 0.28 +3.3 928,349 + SM_b21181 0.31 +2.5 928,515 + SM_b21181 0.45 +3.6 928,516 - SM_b21181 0.45 +2.5 928,516 - SM_b21181 0.45 +2.9 928,516 - SM_b21181 0.45 +1.4 928,653 + SM_b21181 0.57 +3.1 929,096 + +3.5 929,096 + +2.8 929,369 - SM_b21182 0.16 +1.9 929,506 + SM_b21182 0.28 +2.2 929,519 - SM_b21182 0.29 +2.0 929,554 + SM_b21182 0.32 +2.1 929,554 + SM_b21182 0.32 +2.0 929,554 + SM_b21182 0.32 +2.3 929,555 - SM_b21182 0.32 +2.4 929,591 - SM_b21182 0.35 +2.3 929,591 - SM_b21182 0.35 +2.4 929,614 + SM_b21182 0.37 +2.7 929,614 + SM_b21182 0.37 +2.0 929,614 + SM_b21182 0.37 +1.9 929,700 + SM_b21182 0.44 +2.5 929,701 - SM_b21182 0.44 +1.8 929,887 - SM_b21182 0.60 +3.8 930,083 - SM_b21182 0.76 +2.3 930,159 - SM_b21182 0.83 +3.2
Or see this region's nucleotide sequence