Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20857

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20856 and SM_b20857 are separated by 243 nucleotidesSM_b20857 and SM_b20858 are separated by 156 nucleotides SM_b20856: SM_b20856 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,260,905 to 1,261,873 _b20856 SM_b20857: SM_b20857 - glucose-6-phosphate isomerase, at 1,262,117 to 1,262,719 _b20857 SM_b20858: SM_b20858 - hypothetical protein, at 1,262,876 to 1,263,361 _b20858 Position (kb) 1262 1263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1261.147 kb on - strand, within SM_b20856at 1261.406 kb on + strand, within SM_b20856at 1261.696 kb on + strand, within SM_b20856at 1261.697 kb on - strand, within SM_b20856at 1261.697 kb on - strand, within SM_b20856at 1261.697 kb on - strand, within SM_b20856at 1261.756 kb on - strand, within SM_b20856at 1261.773 kb on + strand, within SM_b20856at 1261.774 kb on - strand, within SM_b20856at 1261.774 kb on - strand, within SM_b20856at 1262.124 kb on + strandat 1262.125 kb on - strandat 1262.125 kb on - strandat 1262.192 kb on + strand, within SM_b20857at 1262.193 kb on - strand, within SM_b20857at 1262.193 kb on - strand, within SM_b20857at 1262.226 kb on - strand, within SM_b20857at 1262.244 kb on - strand, within SM_b20857at 1262.244 kb on - strand, within SM_b20857at 1262.254 kb on + strand, within SM_b20857at 1262.283 kb on - strand, within SM_b20857at 1262.283 kb on - strand, within SM_b20857at 1262.372 kb on + strand, within SM_b20857at 1262.424 kb on - strand, within SM_b20857at 1262.506 kb on + strand, within SM_b20857at 1262.506 kb on + strand, within SM_b20857at 1262.507 kb on - strand, within SM_b20857at 1262.507 kb on - strand, within SM_b20857at 1262.507 kb on - strand, within SM_b20857at 1262.507 kb on - strand, within SM_b20857at 1262.513 kb on + strand, within SM_b20857at 1262.513 kb on + strand, within SM_b20857at 1262.513 kb on + strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.514 kb on - strand, within SM_b20857at 1262.568 kb on + strand, within SM_b20857at 1262.568 kb on + strand, within SM_b20857at 1262.568 kb on + strand, within SM_b20857at 1262.569 kb on - strand, within SM_b20857at 1262.606 kb on + strand, within SM_b20857at 1262.643 kb on + strand, within SM_b20857at 1262.644 kb on - strand, within SM_b20857at 1262.718 kb on - strandat 1262.718 kb on - strandat 1262.869 kb on + strandat 1262.869 kb on + strandat 1263.135 kb on + strand, within SM_b20858at 1263.135 kb on + strand, within SM_b20858at 1263.206 kb on + strand, within SM_b20858at 1263.206 kb on + strand, within SM_b20858at 1263.206 kb on + strand, within SM_b20858at 1263.206 kb on + strand, within SM_b20858at 1263.207 kb on - strand, within SM_b20858at 1263.207 kb on - strand, within SM_b20858at 1263.207 kb on - strand, within SM_b20858at 1263.207 kb on - strand, within SM_b20858at 1263.207 kb on - strand, within SM_b20858at 1263.368 kb on + strandat 1263.403 kb on + strandat 1263.472 kb on - strandat 1263.481 kb on - strandat 1263.540 kb on + strandat 1263.544 kb on - strandat 1263.544 kb on - strandat 1263.583 kb on + strandat 1263.662 kb on + strandat 1263.662 kb on + strandat 1263.674 kb on + strandat 1263.674 kb on + strandat 1263.675 kb on - strandat 1263.675 kb on - strandat 1263.675 kb on - strandat 1263.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,261,147 - SM_b20856 0.25 +1.1
1,261,406 + SM_b20856 0.52 -0.4
1,261,696 + SM_b20856 0.82 +0.4
1,261,697 - SM_b20856 0.82 -0.1
1,261,697 - SM_b20856 0.82 -0.9
1,261,697 - SM_b20856 0.82 +0.7
1,261,756 - SM_b20856 0.88 +0.2
1,261,773 + SM_b20856 0.90 -0.8
1,261,774 - SM_b20856 0.90 -0.5
1,261,774 - SM_b20856 0.90 +0.3
1,262,124 + -0.8
1,262,125 - -0.1
1,262,125 - -0.3
1,262,192 + SM_b20857 0.12 +0.4
1,262,193 - SM_b20857 0.13 -0.1
1,262,193 - SM_b20857 0.13 +0.3
1,262,226 - SM_b20857 0.18 -0.1
1,262,244 - SM_b20857 0.21 +0.2
1,262,244 - SM_b20857 0.21 +0.3
1,262,254 + SM_b20857 0.23 +0.7
1,262,283 - SM_b20857 0.28 +0.2
1,262,283 - SM_b20857 0.28 -0.7
1,262,372 + SM_b20857 0.42 -0.0
1,262,424 - SM_b20857 0.51 -0.3
1,262,506 + SM_b20857 0.65 -0.9
1,262,506 + SM_b20857 0.65 -0.2
1,262,507 - SM_b20857 0.65 +0.1
1,262,507 - SM_b20857 0.65 +2.6
1,262,507 - SM_b20857 0.65 -0.2
1,262,507 - SM_b20857 0.65 +2.0
1,262,513 + SM_b20857 0.66 +0.4
1,262,513 + SM_b20857 0.66 +0.3
1,262,513 + SM_b20857 0.66 +0.0
1,262,514 - SM_b20857 0.66 +0.7
1,262,514 - SM_b20857 0.66 -0.1
1,262,514 - SM_b20857 0.66 +0.1
1,262,514 - SM_b20857 0.66 +0.1
1,262,514 - SM_b20857 0.66 +2.0
1,262,514 - SM_b20857 0.66 +0.5
1,262,568 + SM_b20857 0.75 +0.2
1,262,568 + SM_b20857 0.75 +0.7
1,262,568 + SM_b20857 0.75 -0.4
1,262,569 - SM_b20857 0.75 -0.5
1,262,606 + SM_b20857 0.81 +0.1
1,262,643 + SM_b20857 0.87 -0.4
1,262,644 - SM_b20857 0.87 +0.1
1,262,718 - +0.2
1,262,718 - +1.0
1,262,869 + +0.2
1,262,869 + -0.7
1,263,135 + SM_b20858 0.53 -0.2
1,263,135 + SM_b20858 0.53 -0.0
1,263,206 + SM_b20858 0.68 +0.8
1,263,206 + SM_b20858 0.68 -0.3
1,263,206 + SM_b20858 0.68 -0.0
1,263,206 + SM_b20858 0.68 -0.1
1,263,207 - SM_b20858 0.68 -0.2
1,263,207 - SM_b20858 0.68 -0.5
1,263,207 - SM_b20858 0.68 -0.8
1,263,207 - SM_b20858 0.68 -1.8
1,263,207 - SM_b20858 0.68 +1.2
1,263,368 + +0.4
1,263,403 + +0.4
1,263,472 - -0.0
1,263,481 - -0.4
1,263,540 + -0.6
1,263,544 - -0.2
1,263,544 - -0.5
1,263,583 + -1.2
1,263,662 + +0.5
1,263,662 + -0.4
1,263,674 + -0.1
1,263,674 + -0.8
1,263,675 - -0.6
1,263,675 - +0.4
1,263,675 - +3.1
1,263,702 - +0.2

Or see this region's nucleotide sequence