Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20458

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20457 and SM_b20458 are separated by 359 nucleotidesSM_b20458 and SM_b20459 overlap by 1 nucleotidesSM_b20459 and SM_b20460 overlap by 4 nucleotides SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052 _b20457 SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458 _b20458 SM_b20459: SM_b20459 - UDP-glucose 4-epimerase, at 471,458 to 472,444 _b20459 SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306 _b20460 Position (kb) 470 471 472Strain fitness (log2 ratio) -2 -1 0 1 2at 469.440 kb on + strand, within SM_b20457at 469.440 kb on + strand, within SM_b20457at 469.440 kb on + strand, within SM_b20457at 469.441 kb on - strand, within SM_b20457at 469.442 kb on + strand, within SM_b20457at 469.442 kb on + strand, within SM_b20457at 469.443 kb on - strand, within SM_b20457at 469.529 kb on + strand, within SM_b20457at 469.529 kb on + strand, within SM_b20457at 469.529 kb on + strand, within SM_b20457at 469.577 kb on + strand, within SM_b20457at 469.727 kb on + strand, within SM_b20457at 469.731 kb on + strand, within SM_b20457at 469.731 kb on + strand, within SM_b20457at 469.731 kb on + strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.732 kb on - strand, within SM_b20457at 469.854 kb on + strand, within SM_b20457at 469.855 kb on - strand, within SM_b20457at 469.855 kb on - strand, within SM_b20457at 469.872 kb on + strand, within SM_b20457at 469.919 kb on - strand, within SM_b20457at 469.992 kb on + strandat 469.992 kb on + strandat 469.993 kb on - strandat 470.096 kb on + strandat 470.096 kb on + strandat 470.204 kb on + strandat 470.204 kb on + strandat 470.205 kb on - strandat 470.205 kb on - strandat 470.206 kb on + strandat 470.207 kb on - strandat 470.249 kb on - strandat 470.286 kb on - strandat 470.588 kb on + strand, within SM_b20458at 470.589 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.703 kb on - strand, within SM_b20458at 470.733 kb on + strand, within SM_b20458at 470.734 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 471.015 kb on + strand, within SM_b20458at 471.089 kb on + strand, within SM_b20458at 471.089 kb on + strand, within SM_b20458at 471.099 kb on + strand, within SM_b20458at 471.099 kb on + strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.405 kb on + strandat 471.473 kb on - strandat 471.473 kb on - strandat 471.498 kb on - strandat 471.554 kb on + strandat 471.555 kb on - strandat 471.616 kb on + strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.732 kb on - strand, within SM_b20459at 471.824 kb on + strandat 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.926 kb on + strand, within SM_b20459at 471.927 kb on - strand, within SM_b20459at 471.965 kb on + strand, within SM_b20459at 472.123 kb on - strand, within SM_b20459at 472.130 kb on + strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.132 kb on + strand, within SM_b20459at 472.133 kb on - strand, within SM_b20459at 472.133 kb on - strandat 472.133 kb on - strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.270 kb on + strand, within SM_b20459

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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469,440 + SM_b20457 0.47 +0.2
469,440 + SM_b20457 0.47 -0.7
469,440 + SM_b20457 0.47 +0.2
469,441 - SM_b20457 0.47 +0.1
469,442 + SM_b20457 0.47 +0.4
469,442 + SM_b20457 0.47 -0.3
469,443 - SM_b20457 0.47 +1.1
469,529 + SM_b20457 0.54 -0.4
469,529 + SM_b20457 0.54 -0.6
469,529 + SM_b20457 0.54 +0.0
469,577 + SM_b20457 0.59 -0.3
469,727 + SM_b20457 0.72 -0.6
469,731 + SM_b20457 0.72 -0.4
469,731 + SM_b20457 0.72 +1.0
469,731 + SM_b20457 0.72 -0.6
469,732 - SM_b20457 0.72 -0.3
469,732 - SM_b20457 0.72 -1.3
469,732 - SM_b20457 0.72 +0.8
469,732 - SM_b20457 0.72 +0.2
469,732 - SM_b20457 0.72 -0.1
469,732 - SM_b20457 0.72 +0.2
469,854 + SM_b20457 0.83 -0.1
469,855 - SM_b20457 0.83 -0.4
469,855 - SM_b20457 0.83 -0.1
469,872 + SM_b20457 0.84 -0.2
469,919 - SM_b20457 0.88 +1.7
469,992 + -0.4
469,992 + +0.7
469,993 - +1.3
470,096 + -1.2
470,096 + +0.3
470,204 + +0.3
470,204 + -0.7
470,205 - +0.7
470,205 - -0.7
470,206 + +0.3
470,207 - +0.3
470,249 - +0.6
470,286 - +0.1
470,588 + SM_b20458 0.17 -0.2
470,589 - SM_b20458 0.17 +1.3
470,701 - SM_b20458 0.28 +0.5
470,701 - SM_b20458 0.28 +0.5
470,701 - SM_b20458 0.28 +0.2
470,703 - SM_b20458 0.28 -0.2
470,733 + SM_b20458 0.31 +0.8
470,734 - SM_b20458 0.31 +1.6
470,884 - SM_b20458 0.45 -1.2
470,884 - SM_b20458 0.45 +0.8
470,884 - SM_b20458 0.45 -0.1
470,884 - SM_b20458 0.45 -0.7
470,923 - SM_b20458 0.49 +0.0
470,923 - SM_b20458 0.49 +0.8
470,923 - SM_b20458 0.49 -0.3
471,015 + SM_b20458 0.58 -0.6
471,089 + SM_b20458 0.65 -0.3
471,089 + SM_b20458 0.65 +0.4
471,099 + SM_b20458 0.66 +0.1
471,099 + SM_b20458 0.66 -1.0
471,100 - SM_b20458 0.66 +1.2
471,100 - SM_b20458 0.66 -0.7
471,100 - SM_b20458 0.66 -0.3
471,405 + +0.0
471,473 - -1.0
471,473 - +0.5
471,498 - -0.2
471,554 + +0.1
471,555 - -0.1
471,616 + SM_b20459 0.16 -0.4
471,617 - SM_b20459 0.16 +2.1
471,617 - SM_b20459 0.16 -0.0
471,732 - SM_b20459 0.28 -1.1
471,824 + -0.5
471,824 + SM_b20459 0.37 +2.1
471,824 + SM_b20459 0.37 -0.3
471,824 + SM_b20459 0.37 +1.1
471,824 + SM_b20459 0.37 +0.2
471,824 + SM_b20459 0.37 +0.3
471,824 + SM_b20459 0.37 -0.7
471,825 - SM_b20459 0.37 +0.3
471,825 - SM_b20459 0.37 +0.1
471,825 - SM_b20459 0.37 +2.3
471,884 + SM_b20459 0.43 +0.3
471,884 + SM_b20459 0.43 -1.3
471,890 - SM_b20459 0.44 +0.2
471,890 - SM_b20459 0.44 -0.1
471,890 - SM_b20459 0.44 +0.6
471,890 - SM_b20459 0.44 +0.4
471,926 + SM_b20459 0.47 +0.0
471,927 - SM_b20459 0.48 -0.2
471,965 + SM_b20459 0.51 -1.1
472,123 - SM_b20459 0.67 -0.0
472,130 + SM_b20459 0.68 -0.1
472,131 - SM_b20459 0.68 -0.6
472,131 - SM_b20459 0.68 +0.5
472,132 + SM_b20459 0.68 +1.1
472,133 - SM_b20459 0.68 -0.2
472,133 - +0.3
472,133 - SM_b20459 0.68 +0.5
472,239 + SM_b20459 0.79 -0.1
472,239 + SM_b20459 0.79 -2.6
472,270 + SM_b20459 0.82 +0.3

Or see this region's nucleotide sequence