Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20431

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20429 and SM_b20430 are separated by 2 nucleotidesSM_b20430 and SM_b20431 overlap by 1 nucleotidesSM_b20431 and SM_b20432 overlap by 4 nucleotidesSM_b20432 and SM_b20433 overlap by 4 nucleotides SM_b20429: SM_b20429 - amino acid ABC transporter permease, at 444,243 to 444,902 _b20429 SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567 _b20430 SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352 _b20431 SM_b20432: SM_b20432 - threonine dehydratase, at 446,349 to 447,353 _b20432 SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339 _b20433 Position (kb) 445 446 447Strain fitness (log2 ratio) -2 -1 0 1 2at 444.816 kb on + strand, within SM_b20429at 444.817 kb on - strand, within SM_b20429at 445.118 kb on + strand, within SM_b20430at 445.129 kb on - strand, within SM_b20430at 445.130 kb on + strand, within SM_b20430at 445.130 kb on + strand, within SM_b20430at 445.131 kb on - strand, within SM_b20430at 445.209 kb on - strand, within SM_b20430at 445.209 kb on - strand, within SM_b20430at 445.209 kb on - strand, within SM_b20430at 445.223 kb on + strand, within SM_b20430at 445.223 kb on + strand, within SM_b20430at 445.224 kb on - strand, within SM_b20430at 445.305 kb on + strand, within SM_b20430at 445.359 kb on - strand, within SM_b20430at 445.447 kb on + strand, within SM_b20430at 445.448 kb on - strand, within SM_b20430at 445.448 kb on - strand, within SM_b20430at 445.451 kb on + strand, within SM_b20430at 445.451 kb on + strand, within SM_b20430at 445.452 kb on - strand, within SM_b20430at 445.458 kb on - strand, within SM_b20430at 445.458 kb on - strand, within SM_b20430at 445.498 kb on + strand, within SM_b20430at 445.633 kb on - strandat 445.669 kb on - strand, within SM_b20431at 445.721 kb on - strand, within SM_b20431at 445.721 kb on - strand, within SM_b20431at 445.739 kb on - strand, within SM_b20431at 445.840 kb on + strand, within SM_b20431at 445.840 kb on + strand, within SM_b20431at 445.841 kb on - strand, within SM_b20431at 445.841 kb on - strand, within SM_b20431at 445.997 kb on - strand, within SM_b20431at 446.030 kb on - strand, within SM_b20431at 446.251 kb on + strand, within SM_b20431at 446.417 kb on - strandat 446.417 kb on - strandat 446.420 kb on + strandat 446.480 kb on - strand, within SM_b20432at 446.508 kb on - strand, within SM_b20432at 446.645 kb on + strand, within SM_b20432at 446.884 kb on + strand, within SM_b20432at 446.959 kb on + strand, within SM_b20432at 446.959 kb on + strand, within SM_b20432at 446.959 kb on + strand, within SM_b20432at 446.959 kb on + strand, within SM_b20432at 446.960 kb on - strand, within SM_b20432at 447.121 kb on + strand, within SM_b20432at 447.121 kb on + strand, within SM_b20432at 447.121 kb on + strand, within SM_b20432at 447.122 kb on - strand, within SM_b20432at 447.122 kb on - strand, within SM_b20432at 447.269 kb on + strandat 447.270 kb on - strandat 447.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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444,816 + SM_b20429 0.87 +0.6
444,817 - SM_b20429 0.87 -0.1
445,118 + SM_b20430 0.32 +0.0
445,129 - SM_b20430 0.34 +0.9
445,130 + SM_b20430 0.34 -0.0
445,130 + SM_b20430 0.34 +0.4
445,131 - SM_b20430 0.34 -0.9
445,209 - SM_b20430 0.46 +0.8
445,209 - SM_b20430 0.46 +1.0
445,209 - SM_b20430 0.46 +0.2
445,223 + SM_b20430 0.48 -1.1
445,223 + SM_b20430 0.48 +0.2
445,224 - SM_b20430 0.48 +0.3
445,305 + SM_b20430 0.60 +0.3
445,359 - SM_b20430 0.68 +1.5
445,447 + SM_b20430 0.82 +0.4
445,448 - SM_b20430 0.82 -0.1
445,448 - SM_b20430 0.82 -0.2
445,451 + SM_b20430 0.82 -0.3
445,451 + SM_b20430 0.82 -0.2
445,452 - SM_b20430 0.83 +0.0
445,458 - SM_b20430 0.83 +0.2
445,458 - SM_b20430 0.83 +0.8
445,498 + SM_b20430 0.89 -0.2
445,633 - -0.4
445,669 - SM_b20431 0.13 -1.8
445,721 - SM_b20431 0.20 +0.3
445,721 - SM_b20431 0.20 -1.1
445,739 - SM_b20431 0.22 -0.3
445,840 + SM_b20431 0.35 -0.5
445,840 + SM_b20431 0.35 -0.3
445,841 - SM_b20431 0.35 -0.2
445,841 - SM_b20431 0.35 -2.0
445,997 - SM_b20431 0.55 -0.6
446,030 - SM_b20431 0.59 -0.4
446,251 + SM_b20431 0.87 +0.1
446,417 - +0.5
446,417 - -0.5
446,420 + -0.1
446,480 - SM_b20432 0.13 -0.1
446,508 - SM_b20432 0.16 -1.0
446,645 + SM_b20432 0.29 -0.5
446,884 + SM_b20432 0.53 +0.1
446,959 + SM_b20432 0.61 -0.3
446,959 + SM_b20432 0.61 -0.3
446,959 + SM_b20432 0.61 -0.4
446,959 + SM_b20432 0.61 +0.0
446,960 - SM_b20432 0.61 -0.8
447,121 + SM_b20432 0.77 -0.1
447,121 + SM_b20432 0.77 -0.1
447,121 + SM_b20432 0.77 +1.9
447,122 - SM_b20432 0.77 +1.1
447,122 - SM_b20432 0.77 +0.2
447,269 + +0.0
447,270 - -0.7
447,270 - -1.3

Or see this region's nucleotide sequence