Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20108

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20107 and SM_b20108 are separated by 123 nucleotidesSM_b20108 and SM_b20109 are separated by 72 nucleotidesSM_b20109 and SM_b20110 overlap by 4 nucleotides SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579 _b20107 SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211 _b20108 SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207 _b20109 SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151 _b20110 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 117.792 kb on - strand, within SM_b20107at 117.792 kb on - strand, within SM_b20107at 117.867 kb on + strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 117.868 kb on - strand, within SM_b20107at 118.037 kb on + strand, within SM_b20107at 118.055 kb on + strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.056 kb on - strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.115 kb on + strand, within SM_b20107at 118.116 kb on - strand, within SM_b20107at 118.167 kb on + strand, within SM_b20107at 118.168 kb on - strand, within SM_b20107at 118.253 kb on + strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.254 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.256 kb on - strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107at 118.303 kb on + strand, within SM_b20107at 118.646 kb on - strandat 118.646 kb on - strandat 118.798 kb on - strandat 119.252 kb on + strand, within SM_b20108at 119.252 kb on + strand, within SM_b20108at 119.252 kb on + strand, within SM_b20108at 119.253 kb on - strand, within SM_b20108at 119.253 kb on - strand, within SM_b20108at 119.306 kb on + strand, within SM_b20108at 119.306 kb on + strand, within SM_b20108at 119.307 kb on - strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.342 kb on + strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.343 kb on - strand, within SM_b20108at 119.456 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.657 kb on + strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.658 kb on - strand, within SM_b20108at 119.824 kb on - strand, within SM_b20108at 119.855 kb on + strand, within SM_b20108at 119.856 kb on - strand, within SM_b20108at 119.920 kb on + strand, within SM_b20108at 119.921 kb on - strand, within SM_b20108at 119.954 kb on + strand, within SM_b20108at 119.954 kb on + strand, within SM_b20108at 119.972 kb on + strand, within SM_b20108at 119.973 kb on - strand, within SM_b20108at 120.265 kb on - strandat 120.370 kb on + strandat 120.386 kb on + strand, within SM_b20109at 120.393 kb on - strand, within SM_b20109at 120.482 kb on + strand, within SM_b20109at 120.483 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 121.156 kb on - strandat 121.166 kb on + strandat 121.188 kb on + strandat 121.188 kb on + strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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117,792 - SM_b20107 0.18 +0.8
117,792 - SM_b20107 0.18 +0.1
117,867 + SM_b20107 0.25 +0.2
117,868 - SM_b20107 0.26 +1.2
117,868 - SM_b20107 0.26 +0.5
118,037 + SM_b20107 0.43 -0.0
118,055 + SM_b20107 0.45 +0.7
118,056 - SM_b20107 0.45 +0.1
118,056 - SM_b20107 0.45 +1.0
118,056 - SM_b20107 0.45 +0.3
118,056 - SM_b20107 0.45 -1.1
118,115 + SM_b20107 0.51 +0.1
118,115 + SM_b20107 0.51 -0.1
118,115 + SM_b20107 0.51 +1.2
118,115 + SM_b20107 0.51 -0.0
118,116 - SM_b20107 0.52 -1.1
118,167 + SM_b20107 0.57 -0.4
118,168 - SM_b20107 0.57 -1.1
118,253 + SM_b20107 0.66 -0.7
118,254 - SM_b20107 0.66 +0.1
118,254 - SM_b20107 0.66 -0.1
118,254 - SM_b20107 0.66 +0.4
118,256 - SM_b20107 0.66 +0.9
118,256 - SM_b20107 0.66 +0.4
118,303 + SM_b20107 0.71 -1.0
118,303 + SM_b20107 0.71 -0.4
118,646 - -0.5
118,646 - -0.4
118,798 - +0.6
119,252 + SM_b20108 0.36 +0.0
119,252 + SM_b20108 0.36 -0.0
119,252 + SM_b20108 0.36 -2.7
119,253 - SM_b20108 0.36 +0.3
119,253 - SM_b20108 0.36 -0.4
119,306 + SM_b20108 0.40 +0.5
119,306 + SM_b20108 0.40 -0.6
119,307 - SM_b20108 0.40 +0.3
119,342 + SM_b20108 0.42 +0.2
119,342 + SM_b20108 0.42 -0.3
119,343 - SM_b20108 0.42 +0.1
119,343 - SM_b20108 0.42 -0.7
119,456 + SM_b20108 0.50 +1.1
119,657 + SM_b20108 0.63 -1.0
119,657 + SM_b20108 0.63 -0.7
119,657 + SM_b20108 0.63 +0.5
119,657 + SM_b20108 0.63 +0.1
119,657 + SM_b20108 0.63 -1.0
119,657 + SM_b20108 0.63 +0.6
119,657 + SM_b20108 0.63 +2.0
119,657 + SM_b20108 0.63 +0.2
119,658 - SM_b20108 0.63 +0.3
119,658 - SM_b20108 0.63 -0.2
119,658 - SM_b20108 0.63 -1.6
119,824 - SM_b20108 0.74 -1.1
119,855 + SM_b20108 0.76 +1.9
119,856 - SM_b20108 0.76 -0.1
119,920 + SM_b20108 0.81 -0.6
119,921 - SM_b20108 0.81 -0.6
119,954 + SM_b20108 0.83 +0.9
119,954 + SM_b20108 0.83 +0.1
119,972 + SM_b20108 0.84 -0.8
119,973 - SM_b20108 0.84 +1.4
120,265 - -0.1
120,370 + +0.1
120,386 + SM_b20109 0.11 +0.8
120,393 - SM_b20109 0.12 -0.6
120,482 + SM_b20109 0.21 +0.3
120,483 - SM_b20109 0.22 -0.1
120,891 - SM_b20109 0.66 -0.3
120,891 - SM_b20109 0.66 +0.6
121,156 - -0.2
121,166 + +1.5
121,188 + -0.3
121,188 + +0.2
121,189 - +0.9
121,189 - +0.5
121,189 - +1.4
121,189 - +0.4

Or see this region's nucleotide sequence