Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06275

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06270 and RR42_RS06275 are separated by 92 nucleotidesRR42_RS06275 and RR42_RS06280 are separated by 95 nucleotides RR42_RS06270: RR42_RS06270 - cupin, at 1,374,634 to 1,375,761 _RS06270 RR42_RS06275: RR42_RS06275 - peptidylprolyl isomerase, at 1,375,854 to 1,376,387 _RS06275 RR42_RS06280: RR42_RS06280 - membrane protein, at 1,376,483 to 1,377,541 _RS06280 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1374.891 kb on - strand, within RR42_RS06270at 1374.982 kb on - strand, within RR42_RS06270at 1375.223 kb on + strand, within RR42_RS06270at 1375.238 kb on + strand, within RR42_RS06270at 1375.238 kb on + strand, within RR42_RS06270at 1375.239 kb on - strand, within RR42_RS06270at 1375.239 kb on - strand, within RR42_RS06270at 1375.430 kb on + strand, within RR42_RS06270at 1375.430 kb on + strand, within RR42_RS06270at 1375.431 kb on - strand, within RR42_RS06270at 1375.431 kb on - strand, within RR42_RS06270at 1375.734 kb on + strandat 1375.824 kb on - strandat 1375.824 kb on - strandat 1375.824 kb on - strandat 1375.825 kb on + strandat 1375.826 kb on - strandat 1375.890 kb on + strandat 1375.890 kb on + strandat 1375.890 kb on + strandat 1375.890 kb on + strandat 1375.891 kb on - strandat 1375.891 kb on - strandat 1375.948 kb on - strand, within RR42_RS06275at 1375.948 kb on - strand, within RR42_RS06275at 1375.948 kb on - strand, within RR42_RS06275at 1376.061 kb on + strand, within RR42_RS06275at 1376.062 kb on - strand, within RR42_RS06275at 1376.083 kb on + strand, within RR42_RS06275at 1376.083 kb on + strand, within RR42_RS06275at 1376.175 kb on + strand, within RR42_RS06275at 1376.176 kb on - strand, within RR42_RS06275at 1376.176 kb on - strand, within RR42_RS06275at 1376.176 kb on - strand, within RR42_RS06275at 1376.176 kb on - strand, within RR42_RS06275at 1376.428 kb on + strandat 1376.485 kb on - strandat 1376.485 kb on - strandat 1376.559 kb on + strandat 1376.946 kb on + strand, within RR42_RS06280at 1376.947 kb on - strand, within RR42_RS06280at 1377.022 kb on - strand, within RR42_RS06280at 1377.034 kb on + strand, within RR42_RS06280at 1377.034 kb on + strand, within RR42_RS06280at 1377.035 kb on - strand, within RR42_RS06280at 1377.035 kb on - strand, within RR42_RS06280at 1377.193 kb on - strand, within RR42_RS06280at 1377.193 kb on - strand, within RR42_RS06280at 1377.221 kb on + strand, within RR42_RS06280

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,374,891 - RR42_RS06270 0.23 -0.1
1,374,982 - RR42_RS06270 0.31 +0.4
1,375,223 + RR42_RS06270 0.52 -2.6
1,375,238 + RR42_RS06270 0.54 -1.2
1,375,238 + RR42_RS06270 0.54 +0.1
1,375,239 - RR42_RS06270 0.54 +0.4
1,375,239 - RR42_RS06270 0.54 +0.4
1,375,430 + RR42_RS06270 0.71 -2.0
1,375,430 + RR42_RS06270 0.71 +2.8
1,375,431 - RR42_RS06270 0.71 -1.1
1,375,431 - RR42_RS06270 0.71 -0.3
1,375,734 + +0.6
1,375,824 - -1.2
1,375,824 - +0.2
1,375,824 - +0.3
1,375,825 + -1.4
1,375,826 - -0.2
1,375,890 + +1.5
1,375,890 + -0.4
1,375,890 + +0.4
1,375,890 + +1.5
1,375,891 - +0.5
1,375,891 - +0.7
1,375,948 - RR42_RS06275 0.18 -2.4
1,375,948 - RR42_RS06275 0.18 -0.6
1,375,948 - RR42_RS06275 0.18 -0.2
1,376,061 + RR42_RS06275 0.39 +0.0
1,376,062 - RR42_RS06275 0.39 -1.5
1,376,083 + RR42_RS06275 0.43 -1.5
1,376,083 + RR42_RS06275 0.43 -0.3
1,376,175 + RR42_RS06275 0.60 -0.1
1,376,176 - RR42_RS06275 0.60 +0.3
1,376,176 - RR42_RS06275 0.60 -0.4
1,376,176 - RR42_RS06275 0.60 +0.4
1,376,176 - RR42_RS06275 0.60 +0.9
1,376,428 + +1.6
1,376,485 - +0.9
1,376,485 - -0.4
1,376,559 + -0.0
1,376,946 + RR42_RS06280 0.44 -0.8
1,376,947 - RR42_RS06280 0.44 -0.3
1,377,022 - RR42_RS06280 0.51 +0.6
1,377,034 + RR42_RS06280 0.52 -2.0
1,377,034 + RR42_RS06280 0.52 -2.5
1,377,035 - RR42_RS06280 0.52 -0.4
1,377,035 - RR42_RS06280 0.52 -1.2
1,377,193 - RR42_RS06280 0.67 -0.4
1,377,193 - RR42_RS06280 0.67 +0.4
1,377,221 + RR42_RS06280 0.70 -0.3

Or see this region's nucleotide sequence