Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04210 and RR42_RS04215 overlap by 11 nucleotides RR42_RS04215 and RR42_RS04220 are separated by 6 nucleotides RR42_RS04220 and RR42_RS04225 are separated by 15 nucleotides
RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306
_RS04210
RR42_RS04215: RR42_RS04215 - hypothetical protein, at 933,296 to 933,799
_RS04215
RR42_RS04220: RR42_RS04220 - membrane protein, at 933,806 to 934,666
_RS04220
RR42_RS04225: RR42_RS04225 - hypothetical protein, at 934,682 to 935,302
_RS04225
Position (kb) 933
934 Strain fitness (log2 ratio) -2
-1
0
1
2 at 932.352 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 933.019 kb on + strand, within RR42_RS04210 at 933.020 kb on - strand, within RR42_RS04210 at 933.265 kb on + strand at 933.265 kb on + strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.413 kb on + strand, within RR42_RS04215 at 933.445 kb on + strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 934.185 kb on + strand, within RR42_RS04220 at 934.186 kb on - strand, within RR42_RS04220 at 934.392 kb on + strand, within RR42_RS04220 at 934.392 kb on + strand, within RR42_RS04220 at 934.424 kb on + strand, within RR42_RS04220 at 934.464 kb on + strand, within RR42_RS04220 at 934.610 kb on + strand at 934.666 kb on + strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 932,352 + RR42_RS04210 0.26 +2.3 932,581 + RR42_RS04210 0.44 +0.3 932,581 + RR42_RS04210 0.44 -0.5 932,809 + RR42_RS04210 0.61 -1.5 932,809 + RR42_RS04210 0.61 -1.1 932,923 + RR42_RS04210 0.70 -0.5 932,923 + RR42_RS04210 0.70 +0.3 932,923 + RR42_RS04210 0.70 +0.8 932,923 + RR42_RS04210 0.70 -0.2 932,924 - RR42_RS04210 0.70 +0.4 932,924 - RR42_RS04210 0.70 -0.5 932,924 - RR42_RS04210 0.70 -0.4 932,924 - RR42_RS04210 0.70 -0.6 933,019 + RR42_RS04210 0.78 -0.3 933,020 - RR42_RS04210 0.78 +0.3 933,265 + +0.3 933,265 + -0.9 933,266 - +0.3 933,266 - +0.1 933,266 - -0.1 933,413 + RR42_RS04215 0.23 -0.2 933,445 + RR42_RS04215 0.30 -0.2 933,446 - RR42_RS04215 0.30 -0.9 933,446 - RR42_RS04215 0.30 +1.3 933,532 + RR42_RS04215 0.47 +1.0 933,532 + RR42_RS04215 0.47 +1.6 933,532 + RR42_RS04215 0.47 +1.0 933,532 + RR42_RS04215 0.47 -0.6 933,533 - RR42_RS04215 0.47 +0.1 933,533 - RR42_RS04215 0.47 +1.3 933,533 - RR42_RS04215 0.47 -1.2 933,533 - RR42_RS04215 0.47 -1.9 933,533 - RR42_RS04215 0.47 +0.2 933,534 + RR42_RS04215 0.47 -0.3 933,534 + RR42_RS04215 0.47 -0.0 933,534 + RR42_RS04215 0.47 +0.4 933,534 + RR42_RS04215 0.47 -1.1 933,535 - RR42_RS04215 0.47 -0.2 933,535 - RR42_RS04215 0.47 +1.3 933,535 - RR42_RS04215 0.47 +0.7 933,535 - RR42_RS04215 0.47 +0.8 933,535 - RR42_RS04215 0.47 +0.1 934,185 + RR42_RS04220 0.44 -0.7 934,186 - RR42_RS04220 0.44 -0.5 934,392 + RR42_RS04220 0.68 -0.2 934,392 + RR42_RS04220 0.68 -1.3 934,424 + RR42_RS04220 0.72 +0.7 934,464 + RR42_RS04220 0.76 -0.7 934,610 + +0.3 934,666 + -0.0 934,667 - -0.4 934,667 - +0.9 934,667 - -0.1 934,667 - -1.2 934,670 + -1.8 934,670 + -0.1 934,670 + -0.9 934,670 + +0.0 934,671 - -0.1 934,671 - -1.3 934,671 - +0.5 934,671 - -0.0 934,671 - -0.5 934,671 - +0.2
Or see this region's nucleotide sequence