Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03960 and RR42_RS03965 are separated by 186 nucleotides RR42_RS03965 and RR42_RS03970 are separated by 699 nucleotides
RR42_RS03960: RR42_RS03960 - ornithine cyclodeaminase, at 873,560 to 874,636
_RS03960
RR42_RS03965: RR42_RS03965 - DNA-binding protein, at 874,823 to 875,425
_RS03965
RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940
_RS03970
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.053 kb on - strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.237 kb on + strand, within RR42_RS03960 at 874.238 kb on - strand, within RR42_RS03960 at 874.571 kb on + strand at 874.571 kb on + strand at 874.571 kb on + strand at 874.706 kb on - strand at 874.773 kb on + strand at 874.773 kb on + strand at 874.774 kb on - strand at 874.774 kb on - strand at 874.774 kb on - strand at 874.948 kb on - strand, within RR42_RS03965 at 874.948 kb on - strand, within RR42_RS03965 at 875.052 kb on + strand, within RR42_RS03965 at 875.052 kb on + strand, within RR42_RS03965 at 875.053 kb on - strand, within RR42_RS03965 at 875.055 kb on + strand, within RR42_RS03965 at 875.056 kb on - strand, within RR42_RS03965 at 875.056 kb on - strand, within RR42_RS03965 at 875.089 kb on + strand, within RR42_RS03965 at 875.089 kb on + strand, within RR42_RS03965 at 875.090 kb on - strand, within RR42_RS03965 at 875.090 kb on - strand, within RR42_RS03965 at 875.090 kb on - strand, within RR42_RS03965 at 875.090 kb on - strand, within RR42_RS03965 at 875.099 kb on - strand, within RR42_RS03965 at 875.272 kb on + strand, within RR42_RS03965 at 875.272 kb on + strand, within RR42_RS03965 at 875.272 kb on + strand, within RR42_RS03965 at 875.273 kb on - strand, within RR42_RS03965 at 875.273 kb on - strand, within RR42_RS03965 at 875.273 kb on - strand, within RR42_RS03965 at 875.273 kb on - strand, within RR42_RS03965 at 875.273 kb on - strand, within RR42_RS03965 at 875.276 kb on + strand, within RR42_RS03965 at 875.276 kb on + strand, within RR42_RS03965 at 875.276 kb on + strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.277 kb on - strand, within RR42_RS03965 at 875.339 kb on + strand, within RR42_RS03965 at 875.340 kb on - strand, within RR42_RS03965 at 875.388 kb on + strand at 875.388 kb on + strand at 875.389 kb on - strand at 875.389 kb on - strand at 875.389 kb on - strand at 875.389 kb on - strand at 875.389 kb on - strand at 875.392 kb on - strand at 875.442 kb on + strand at 875.443 kb on - strand at 875.521 kb on + strand at 875.521 kb on + strand at 875.559 kb on - strand at 875.559 kb on - strand at 875.559 kb on - strand at 875.637 kb on + strand at 875.637 kb on + strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.638 kb on - strand at 875.689 kb on - strand at 875.689 kb on - strand at 875.704 kb on + strand at 875.705 kb on - strand at 875.705 kb on - strand at 875.774 kb on + strand at 875.775 kb on - strand at 875.775 kb on - strand at 875.828 kb on + strand at 875.829 kb on - strand at 875.829 kb on - strand at 875.871 kb on + strand at 875.872 kb on - strand at 875.872 kb on - strand at 875.904 kb on - strand at 875.904 kb on - strand at 875.904 kb on - strand at 875.916 kb on + strand at 875.916 kb on + strand at 875.916 kb on + strand at 875.917 kb on - strand at 875.917 kb on - strand at 876.157 kb on - strand at 876.184 kb on - strand at 876.229 kb on - strand, within RR42_RS03970 at 876.229 kb on - strand, within RR42_RS03970 at 876.393 kb on + strand, within RR42_RS03970 at 876.393 kb on + strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 874,053 - RR42_RS03960 0.46 -0.1 874,237 + RR42_RS03960 0.63 -0.2 874,237 + RR42_RS03960 0.63 +0.7 874,238 - RR42_RS03960 0.63 -0.7 874,571 + -0.2 874,571 + +0.0 874,571 + +0.2 874,706 - +0.5 874,773 + +0.2 874,773 + -0.1 874,774 - +0.6 874,774 - +1.1 874,774 - +0.4 874,948 - RR42_RS03965 0.21 -2.9 874,948 - RR42_RS03965 0.21 -0.7 875,052 + RR42_RS03965 0.38 -0.3 875,052 + RR42_RS03965 0.38 -0.7 875,053 - RR42_RS03965 0.38 +0.1 875,055 + RR42_RS03965 0.38 -1.5 875,056 - RR42_RS03965 0.39 +0.2 875,056 - RR42_RS03965 0.39 -0.1 875,089 + RR42_RS03965 0.44 -0.2 875,089 + RR42_RS03965 0.44 +0.5 875,090 - RR42_RS03965 0.44 -0.1 875,090 - RR42_RS03965 0.44 +1.6 875,090 - RR42_RS03965 0.44 -0.7 875,090 - RR42_RS03965 0.44 -0.4 875,099 - RR42_RS03965 0.46 +0.5 875,272 + RR42_RS03965 0.74 -0.8 875,272 + RR42_RS03965 0.74 -0.9 875,272 + RR42_RS03965 0.74 -0.5 875,273 - RR42_RS03965 0.75 -0.1 875,273 - RR42_RS03965 0.75 +0.6 875,273 - RR42_RS03965 0.75 -0.5 875,273 - RR42_RS03965 0.75 +1.3 875,273 - RR42_RS03965 0.75 +0.6 875,276 + RR42_RS03965 0.75 -0.7 875,276 + RR42_RS03965 0.75 -0.5 875,276 + RR42_RS03965 0.75 -0.6 875,277 - RR42_RS03965 0.75 -0.6 875,277 - RR42_RS03965 0.75 -1.0 875,277 - RR42_RS03965 0.75 +0.0 875,277 - RR42_RS03965 0.75 -0.3 875,277 - RR42_RS03965 0.75 +0.3 875,277 - RR42_RS03965 0.75 +0.2 875,277 - RR42_RS03965 0.75 -0.5 875,277 - RR42_RS03965 0.75 +0.5 875,339 + RR42_RS03965 0.86 -0.8 875,340 - RR42_RS03965 0.86 +0.1 875,388 + +0.1 875,388 + -0.7 875,389 - -1.5 875,389 - -0.2 875,389 - +0.7 875,389 - +1.2 875,389 - +0.2 875,392 - -0.2 875,442 + +0.1 875,443 - +1.8 875,521 + -0.7 875,521 + +0.3 875,559 - +0.9 875,559 - +1.5 875,559 - +0.2 875,637 + -0.6 875,637 + -0.7 875,638 - +0.8 875,638 - -0.0 875,638 - -0.6 875,638 - +0.3 875,638 - +1.3 875,638 - -0.2 875,638 - +0.1 875,638 - -0.1 875,689 - +1.3 875,689 - -0.2 875,704 + +0.8 875,705 - +0.1 875,705 - +0.0 875,774 + +0.3 875,775 - +0.1 875,775 - -0.5 875,828 + -0.1 875,829 - -1.2 875,829 - -1.0 875,871 + -0.8 875,872 - -0.5 875,872 - +0.3 875,904 - +0.7 875,904 - +0.6 875,904 - -0.3 875,916 + +1.6 875,916 + -0.1 875,916 + -0.5 875,917 - -1.2 875,917 - -0.4 876,157 - +0.1 876,184 - -0.2 876,229 - RR42_RS03970 0.13 -0.1 876,229 - RR42_RS03970 0.13 -0.5 876,393 + RR42_RS03970 0.33 -0.4 876,393 + RR42_RS03970 0.33 -0.8 876,394 - RR42_RS03970 0.33 -1.5 876,394 - RR42_RS03970 0.33 -1.1 876,394 - RR42_RS03970 0.33 +0.7
Or see this region's nucleotide sequence