Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01505 and RR42_RS01510 are separated by 258 nucleotides RR42_RS01510 and RR42_RS01515 are separated by 85 nucleotides RR42_RS01515 and RR42_RS01520 are separated by 195 nucleotides
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
RR42_RS01510: RR42_RS01510 - N-acetylglutamate synthase, at 340,577 to 341,020
_RS01510
RR42_RS01515: RR42_RS01515 - cytidyltransferase, at 341,106 to 342,152
_RS01515
RR42_RS01520: RR42_RS01520 - LysR family transcriptional regulator, at 342,348 to 343,268
_RS01520
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 340.161 kb on + strand at 340.162 kb on - strand at 340.162 kb on - strand at 340.285 kb on + strand, within RR42_RS01505 at 340.321 kb on - strand at 340.321 kb on - strand at 340.422 kb on - strand at 340.509 kb on + strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.570 kb on - strand at 340.696 kb on + strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.780 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 341.113 kb on - strand at 341.113 kb on - strand at 341.114 kb on + strand at 341.334 kb on + strand, within RR42_RS01515 at 341.335 kb on - strand, within RR42_RS01515 at 341.335 kb on - strand, within RR42_RS01515 at 341.337 kb on + strand, within RR42_RS01515 at 341.338 kb on - strand, within RR42_RS01515 at 341.458 kb on - strand, within RR42_RS01515 at 341.652 kb on + strand, within RR42_RS01515 at 342.186 kb on + strand at 342.279 kb on + strand at 342.280 kb on - strand at 342.359 kb on + strand at 342.361 kb on + strand at 342.362 kb on - strand at 342.362 kb on - strand at 342.362 kb on - strand at 342.362 kb on - strand at 342.558 kb on + strand, within RR42_RS01520 at 342.558 kb on + strand, within RR42_RS01520 at 342.559 kb on - strand, within RR42_RS01520 at 342.631 kb on - strand, within RR42_RS01520 at 342.673 kb on + strand, within RR42_RS01520 at 342.673 kb on + strand, within RR42_RS01520 at 342.673 kb on + strand, within RR42_RS01520 at 342.674 kb on - strand, within RR42_RS01520 at 342.757 kb on + strand, within RR42_RS01520 at 342.758 kb on - strand, within RR42_RS01520 at 342.774 kb on + strand, within RR42_RS01520 at 342.774 kb on + strand, within RR42_RS01520 at 342.775 kb on - strand, within RR42_RS01520 at 342.775 kb on - strand, within RR42_RS01520 at 342.775 kb on - strand, within RR42_RS01520 at 342.775 kb on - strand, within RR42_RS01520 at 343.075 kb on + strand, within RR42_RS01520 at 343.076 kb on - strand, within RR42_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 340,161 + -0.8 340,162 - +0.1 340,162 - -1.3 340,285 + RR42_RS01505 0.55 -1.1 340,321 - +2.3 340,321 - +0.5 340,422 - +0.6 340,509 + +0.6 340,510 - +0.3 340,510 - +0.0 340,510 - +0.4 340,570 - -2.1 340,696 + RR42_RS01510 0.27 -1.1 340,697 - RR42_RS01510 0.27 -0.7 340,697 - RR42_RS01510 0.27 +0.1 340,697 - RR42_RS01510 0.27 +0.3 340,780 - RR42_RS01510 0.46 -1.3 340,817 - RR42_RS01510 0.54 +0.4 340,817 - RR42_RS01510 0.54 -0.0 340,896 - RR42_RS01510 0.72 +0.5 340,896 - RR42_RS01510 0.72 +0.3 341,113 - +0.4 341,113 - +0.8 341,114 + -0.5 341,334 + RR42_RS01515 0.22 +0.2 341,335 - RR42_RS01515 0.22 -0.4 341,335 - RR42_RS01515 0.22 +2.3 341,337 + RR42_RS01515 0.22 +0.6 341,338 - RR42_RS01515 0.22 +1.1 341,458 - RR42_RS01515 0.34 +0.3 341,652 + RR42_RS01515 0.52 +0.2 342,186 + +0.4 342,279 + +1.6 342,280 - +0.3 342,359 + +0.3 342,361 + +0.1 342,362 - -0.5 342,362 - +2.8 342,362 - +1.7 342,362 - +0.5 342,558 + RR42_RS01520 0.23 -0.6 342,558 + RR42_RS01520 0.23 +0.6 342,559 - RR42_RS01520 0.23 -0.6 342,631 - RR42_RS01520 0.31 +0.9 342,673 + RR42_RS01520 0.35 +0.6 342,673 + RR42_RS01520 0.35 -0.2 342,673 + RR42_RS01520 0.35 -1.7 342,674 - RR42_RS01520 0.35 +2.0 342,757 + RR42_RS01520 0.44 +0.6 342,758 - RR42_RS01520 0.45 +1.3 342,774 + RR42_RS01520 0.46 +0.7 342,774 + RR42_RS01520 0.46 -0.3 342,775 - RR42_RS01520 0.46 +0.6 342,775 - RR42_RS01520 0.46 +0.5 342,775 - RR42_RS01520 0.46 -0.8 342,775 - RR42_RS01520 0.46 +0.7 343,075 + RR42_RS01520 0.79 +0.5 343,076 - RR42_RS01520 0.79 -2.1
Or see this region's nucleotide sequence