Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01360 and RR42_RS01365 are separated by 4 nucleotides RR42_RS01365 and RR42_RS01370 are separated by 93 nucleotides RR42_RS01370 and RR42_RS01375 are separated by 286 nucleotides
RR42_RS01360: RR42_RS01360 - phenylacetic acid degradation protein, at 309,398 to 309,826
_RS01360
RR42_RS01365: RR42_RS01365 - hypothetical protein, at 309,831 to 310,271
_RS01365
RR42_RS01370: RR42_RS01370 - phosphomethylpyrimidine kinase, at 310,365 to 311,195
_RS01370
RR42_RS01375: RR42_RS01375 - S-adenosyl-L-homocysteine hydrolase, at 311,482 to 312,915
_RS01375
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.434 kb on + strand at 309.649 kb on + strand, within RR42_RS01360 at 309.649 kb on + strand, within RR42_RS01360 at 309.650 kb on - strand, within RR42_RS01360 at 309.650 kb on - strand, within RR42_RS01360 at 309.892 kb on + strand, within RR42_RS01365 at 310.063 kb on + strand, within RR42_RS01365 at 310.194 kb on + strand, within RR42_RS01365 at 310.195 kb on - strand, within RR42_RS01365 at 310.203 kb on + strand, within RR42_RS01365 at 310.204 kb on - strand, within RR42_RS01365 at 310.219 kb on + strand, within RR42_RS01365 at 310.338 kb on + strand at 310.339 kb on - strand at 310.339 kb on - strand at 310.343 kb on - strand at 310.351 kb on - strand at 310.355 kb on - strand at 310.362 kb on + strand at 310.363 kb on - strand at 310.363 kb on - strand at 310.367 kb on - strand at 311.259 kb on + strand at 311.259 kb on + strand at 311.358 kb on + strand at 311.358 kb on + strand at 311.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 309,434 + +0.1 309,649 + RR42_RS01360 0.59 +1.0 309,649 + RR42_RS01360 0.59 +0.3 309,650 - RR42_RS01360 0.59 -0.5 309,650 - RR42_RS01360 0.59 +0.1 309,892 + RR42_RS01365 0.14 +0.7 310,063 + RR42_RS01365 0.53 +0.2 310,194 + RR42_RS01365 0.82 -2.6 310,195 - RR42_RS01365 0.83 +0.8 310,203 + RR42_RS01365 0.84 -0.9 310,204 - RR42_RS01365 0.85 +0.0 310,219 + RR42_RS01365 0.88 -0.2 310,338 + -1.4 310,339 - +0.2 310,339 - -0.3 310,343 - +0.8 310,351 - -0.6 310,355 - +0.1 310,362 + -0.1 310,363 - +1.4 310,363 - -0.5 310,367 - +2.1 311,259 + -0.8 311,259 + -0.4 311,358 + -0.0 311,358 + +0.6 311,358 + +1.2
Or see this region's nucleotide sequence