Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01240

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01230 and RR42_RS01235 are separated by 86 nucleotidesRR42_RS01235 and RR42_RS01240 are separated by 122 nucleotidesRR42_RS01240 and RR42_RS01245 are separated by 52 nucleotidesRR42_RS01245 and RR42_RS01250 are separated by 48 nucleotides RR42_RS01230: RR42_RS01230 - acetoacetate decarboxylase, at 278,651 to 279,391 _RS01230 RR42_RS01235: RR42_RS01235 - 3-hydroxybutyrate dehydrogenase, at 279,478 to 280,260 _RS01235 RR42_RS01240: RR42_RS01240 - membrane protein, at 280,383 to 281,735 _RS01240 RR42_RS01245: RR42_RS01245 - polyphosphate kinase, at 281,788 to 282,597 _RS01245 RR42_RS01250: RR42_RS01250 - diaminopimelate epimerase, at 282,646 to 283,512 _RS01250 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.778 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.862 kb on + strand, within RR42_RS01235at 279.862 kb on + strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.892 kb on + strand, within RR42_RS01235at 279.892 kb on + strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.940 kb on + strand, within RR42_RS01235at 279.940 kb on + strand, within RR42_RS01235at 279.941 kb on - strand, within RR42_RS01235at 280.004 kb on - strand, within RR42_RS01235at 280.004 kb on - strand, within RR42_RS01235at 280.231 kb on - strandat 280.249 kb on + strandat 280.249 kb on + strandat 280.249 kb on + strandat 280.250 kb on - strandat 280.250 kb on - strandat 280.259 kb on - strandat 280.417 kb on + strandat 280.418 kb on - strandat 280.418 kb on - strandat 280.418 kb on - strandat 280.441 kb on + strandat 280.442 kb on - strandat 280.593 kb on + strand, within RR42_RS01240at 280.593 kb on + strand, within RR42_RS01240at 280.593 kb on + strand, within RR42_RS01240at 280.641 kb on + strand, within RR42_RS01240at 280.656 kb on + strand, within RR42_RS01240at 280.688 kb on + strand, within RR42_RS01240at 280.689 kb on - strand, within RR42_RS01240at 280.788 kb on + strand, within RR42_RS01240at 280.789 kb on - strand, within RR42_RS01240at 280.789 kb on - strand, within RR42_RS01240at 280.827 kb on + strand, within RR42_RS01240at 280.992 kb on + strand, within RR42_RS01240at 280.992 kb on + strand, within RR42_RS01240at 280.995 kb on + strand, within RR42_RS01240at 280.995 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.119 kb on - strand, within RR42_RS01240at 281.218 kb on - strand, within RR42_RS01240at 281.376 kb on + strand, within RR42_RS01240at 281.377 kb on - strand, within RR42_RS01240at 281.387 kb on + strand, within RR42_RS01240at 281.406 kb on + strand, within RR42_RS01240at 281.407 kb on - strand, within RR42_RS01240at 281.407 kb on - strand, within RR42_RS01240at 281.407 kb on - strand, within RR42_RS01240at 281.407 kb on - strand, within RR42_RS01240at 281.508 kb on + strand, within RR42_RS01240at 281.509 kb on - strand, within RR42_RS01240at 281.509 kb on - strand, within RR42_RS01240at 281.832 kb on - strandat 281.918 kb on + strand, within RR42_RS01245at 281.918 kb on + strand, within RR42_RS01245at 281.918 kb on + strand, within RR42_RS01245at 281.919 kb on - strand, within RR42_RS01245at 281.919 kb on - strand, within RR42_RS01245at 281.961 kb on + strand, within RR42_RS01245at 281.964 kb on - strand, within RR42_RS01245at 281.964 kb on - strand, within RR42_RS01245at 282.145 kb on + strand, within RR42_RS01245at 282.156 kb on - strand, within RR42_RS01245at 282.284 kb on + strand, within RR42_RS01245at 282.440 kb on + strand, within RR42_RS01245at 282.440 kb on + strand, within RR42_RS01245at 282.642 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
279,778 + RR42_RS01235 0.38 +0.6
279,858 + RR42_RS01235 0.49 -0.5
279,858 + RR42_RS01235 0.49 +0.2
279,858 + RR42_RS01235 0.49 -0.3
279,858 + RR42_RS01235 0.49 +0.7
279,858 + RR42_RS01235 0.49 +0.4
279,859 - RR42_RS01235 0.49 -0.3
279,859 - RR42_RS01235 0.49 -2.1
279,859 - RR42_RS01235 0.49 -0.8
279,859 - RR42_RS01235 0.49 -0.2
279,859 - RR42_RS01235 0.49 -0.5
279,859 - RR42_RS01235 0.49 -0.9
279,859 - RR42_RS01235 0.49 -0.1
279,859 - RR42_RS01235 0.49 -0.0
279,859 - RR42_RS01235 0.49 -0.4
279,862 + RR42_RS01235 0.49 +0.2
279,862 + RR42_RS01235 0.49 -1.8
279,863 - RR42_RS01235 0.49 +0.2
279,863 - RR42_RS01235 0.49 +0.3
279,863 - RR42_RS01235 0.49 +2.2
279,892 + RR42_RS01235 0.53 -0.0
279,892 + RR42_RS01235 0.53 -0.1
279,893 - RR42_RS01235 0.53 -0.7
279,893 - RR42_RS01235 0.53 -2.0
279,893 - RR42_RS01235 0.53 +0.6
279,940 + RR42_RS01235 0.59 -0.4
279,940 + RR42_RS01235 0.59 -0.5
279,941 - RR42_RS01235 0.59 -1.8
280,004 - RR42_RS01235 0.67 +0.1
280,004 - RR42_RS01235 0.67 +0.2
280,231 - +0.2
280,249 + +0.3
280,249 + -0.7
280,249 + +0.7
280,250 - -0.6
280,250 - -0.5
280,259 - -1.3
280,417 + +0.6
280,418 - -0.4
280,418 - +0.2
280,418 - -0.2
280,441 + -0.3
280,442 - -0.7
280,593 + RR42_RS01240 0.16 +0.3
280,593 + RR42_RS01240 0.16 -0.3
280,593 + RR42_RS01240 0.16 -1.0
280,641 + RR42_RS01240 0.19 -0.8
280,656 + RR42_RS01240 0.20 +0.8
280,688 + RR42_RS01240 0.23 +0.7
280,689 - RR42_RS01240 0.23 +0.8
280,788 + RR42_RS01240 0.30 -0.6
280,789 - RR42_RS01240 0.30 +2.6
280,789 - RR42_RS01240 0.30 +0.1
280,827 + RR42_RS01240 0.33 -1.0
280,992 + RR42_RS01240 0.45 +0.7
280,992 + RR42_RS01240 0.45 +0.6
280,995 + RR42_RS01240 0.45 +0.6
280,995 + RR42_RS01240 0.45 +0.1
281,000 + RR42_RS01240 0.46 +0.6
281,000 + RR42_RS01240 0.46 -0.6
281,000 + RR42_RS01240 0.46 +1.2
281,000 + RR42_RS01240 0.46 +0.3
281,000 + RR42_RS01240 0.46 +0.7
281,119 - RR42_RS01240 0.54 -1.2
281,218 - RR42_RS01240 0.62 +0.5
281,376 + RR42_RS01240 0.73 +0.5
281,377 - RR42_RS01240 0.73 +0.1
281,387 + RR42_RS01240 0.74 +1.4
281,406 + RR42_RS01240 0.76 +0.2
281,407 - RR42_RS01240 0.76 +1.6
281,407 - RR42_RS01240 0.76 -0.1
281,407 - RR42_RS01240 0.76 +0.0
281,407 - RR42_RS01240 0.76 -0.0
281,508 + RR42_RS01240 0.83 +0.7
281,509 - RR42_RS01240 0.83 +0.6
281,509 - RR42_RS01240 0.83 +1.2
281,832 - -2.0
281,918 + RR42_RS01245 0.16 -0.4
281,918 + RR42_RS01245 0.16 -0.1
281,918 + RR42_RS01245 0.16 +0.4
281,919 - RR42_RS01245 0.16 +0.3
281,919 - RR42_RS01245 0.16 -1.7
281,961 + RR42_RS01245 0.21 +0.5
281,964 - RR42_RS01245 0.22 -0.2
281,964 - RR42_RS01245 0.22 -1.9
282,145 + RR42_RS01245 0.44 -1.4
282,156 - RR42_RS01245 0.45 +0.1
282,284 + RR42_RS01245 0.61 +1.2
282,440 + RR42_RS01245 0.80 -0.0
282,440 + RR42_RS01245 0.80 +0.8
282,642 - -0.7

Or see this region's nucleotide sequence