Experiment: Nickel (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01775 and HSERO_RS01780 are separated by 428 nucleotides HSERO_RS01780 and HSERO_RS01785 are separated by 109 nucleotides HSERO_RS01785 and HSERO_RS01790 are separated by 143 nucleotides HSERO_RS01790 and HSERO_RS01795 are separated by 16 nucleotides
HSERO_RS01775: HSERO_RS01775 - hypothetical protein, at 394,189 to 395,493
_RS01775
HSERO_RS01780: HSERO_RS01780 - translation initiation factor IF-1, at 395,922 to 396,185
_RS01780
HSERO_RS01785: HSERO_RS01785 - hypothetical protein, at 396,295 to 396,546
_RS01785
HSERO_RS01790: HSERO_RS01790 - tRNA-Pro, at 396,690 to 396,766
_RS01790
HSERO_RS01795: HSERO_RS01795 - octaprenyl diphosphate synthase, at 396,783 to 397,772
_RS01795
Position (kb) 396
397 Strain fitness (log2 ratio) -1
0
1
2
3 at 395.295 kb on + strand, within HSERO_RS01775 at 395.372 kb on - strand at 395.450 kb on - strand at 395.457 kb on + strand at 395.701 kb on + strand at 395.703 kb on + strand at 395.913 kb on - strand at 395.999 kb on + strand, within HSERO_RS01780 at 396.347 kb on - strand, within HSERO_RS01785 at 396.412 kb on - strand, within HSERO_RS01785
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.6 mM remove 395,295 + HSERO_RS01775 0.85 +1.5 395,372 - +1.0 395,450 - +1.4 395,457 + +1.2 395,701 + +0.2 395,703 + -1.1 395,913 - -0.6 395,999 + HSERO_RS01780 0.29 -0.0 396,347 - HSERO_RS01785 0.21 -0.8 396,412 - HSERO_RS01785 0.46 +3.2
Or see this region's nucleotide sequence