Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27180

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27175 and AO356_27180 are separated by 868 nucleotidesAO356_27180 and AO356_27185 overlap by 4 nucleotides AO356_27175: AO356_27175 - hypothetical protein, at 6,193,331 to 6,193,885 _27175 AO356_27180: AO356_27180 - hypothetical protein, at 6,194,754 to 6,195,989 _27180 AO356_27185: AO356_27185 - hypothetical protein, at 6,195,986 to 6,197,503 _27185 Position (kb) 6194 6195 6196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6193.899 kb on - strandat 6193.943 kb on + strandat 6193.944 kb on - strandat 6193.944 kb on - strandat 6193.944 kb on - strandat 6193.949 kb on - strandat 6193.949 kb on - strandat 6193.949 kb on - strandat 6193.992 kb on + strandat 6193.992 kb on + strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6194.014 kb on - strandat 6194.081 kb on + strandat 6194.162 kb on - strandat 6194.206 kb on + strandat 6194.207 kb on - strandat 6194.207 kb on - strandat 6194.279 kb on - strandat 6194.279 kb on - strandat 6194.350 kb on + strandat 6194.351 kb on - strandat 6194.363 kb on - strandat 6194.384 kb on + strandat 6194.385 kb on - strandat 6194.427 kb on - strandat 6194.439 kb on + strandat 6194.450 kb on + strandat 6194.450 kb on + strandat 6194.450 kb on + strandat 6194.450 kb on + strandat 6194.450 kb on + strandat 6194.450 kb on + strandat 6194.451 kb on - strandat 6194.451 kb on - strandat 6194.451 kb on - strandat 6194.451 kb on - strandat 6194.473 kb on - strandat 6194.505 kb on + strandat 6194.638 kb on + strandat 6194.638 kb on + strandat 6194.638 kb on + strandat 6194.638 kb on + strandat 6194.639 kb on - strandat 6194.639 kb on - strandat 6194.639 kb on - strandat 6194.639 kb on - strandat 6194.662 kb on + strandat 6194.662 kb on + strandat 6194.756 kb on - strandat 6194.846 kb on + strandat 6194.941 kb on + strand, within AO356_27180at 6195.076 kb on + strand, within AO356_27180at 6195.077 kb on - strand, within AO356_27180at 6195.437 kb on - strand, within AO356_27180at 6195.793 kb on + strand, within AO356_27180at 6195.989 kb on + strandat 6195.990 kb on - strandat 6196.089 kb on + strandat 6196.153 kb on - strand, within AO356_27185at 6196.414 kb on + strand, within AO356_27185at 6196.414 kb on + strand, within AO356_27185at 6196.604 kb on - strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.652 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.934 kb on + strand, within AO356_27185at 6196.935 kb on - strand, within AO356_27185at 6196.951 kb on - strand, within AO356_27185at 6196.979 kb on - strand, within AO356_27185

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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6,193,899 - +0.9
6,193,943 + +0.0
6,193,944 - -0.0
6,193,944 - +0.4
6,193,944 - -0.8
6,193,949 - +1.0
6,193,949 - +0.9
6,193,949 - -1.4
6,193,992 + +0.2
6,193,992 + -0.7
6,193,993 - +1.1
6,193,993 - -0.7
6,193,993 - -0.7
6,193,993 - +0.3
6,194,014 - +0.3
6,194,081 + +0.1
6,194,162 - +0.4
6,194,206 + -0.6
6,194,207 - +0.4
6,194,207 - +0.1
6,194,279 - +0.2
6,194,279 - -0.3
6,194,350 + -0.9
6,194,351 - +0.1
6,194,363 - +2.0
6,194,384 + -0.2
6,194,385 - +1.1
6,194,427 - -0.7
6,194,439 + -0.9
6,194,450 + +0.4
6,194,450 + -0.1
6,194,450 + +0.2
6,194,450 + +1.6
6,194,450 + +0.0
6,194,450 + -0.3
6,194,451 - +0.8
6,194,451 - -0.6
6,194,451 - -0.6
6,194,451 - -0.4
6,194,473 - -0.9
6,194,505 + +0.1
6,194,638 + +0.5
6,194,638 + -0.4
6,194,638 + -0.6
6,194,638 + -0.4
6,194,639 - -0.1
6,194,639 - +0.5
6,194,639 - +0.7
6,194,639 - +0.4
6,194,662 + +0.5
6,194,662 + -0.1
6,194,756 - -0.4
6,194,846 + -3.2
6,194,941 + AO356_27180 0.15 -3.1
6,195,076 + AO356_27180 0.26 -0.3
6,195,077 - AO356_27180 0.26 -3.4
6,195,437 - AO356_27180 0.55 -1.4
6,195,793 + AO356_27180 0.84 -1.7
6,195,989 + -1.2
6,195,990 - -2.6
6,196,089 + -2.2
6,196,153 - AO356_27185 0.11 -0.6
6,196,414 + AO356_27185 0.28 -2.7
6,196,414 + AO356_27185 0.28 -2.0
6,196,604 - AO356_27185 0.41 +0.2
6,196,651 + AO356_27185 0.44 -0.9
6,196,651 + AO356_27185 0.44 -2.2
6,196,651 + AO356_27185 0.44 -1.2
6,196,652 - AO356_27185 0.44 -0.0
6,196,700 - AO356_27185 0.47 -0.3
6,196,700 - AO356_27185 0.47 -0.2
6,196,807 - AO356_27185 0.54 +1.8
6,196,807 - AO356_27185 0.54 -0.1
6,196,916 - AO356_27185 0.61 +0.9
6,196,916 - AO356_27185 0.61 +0.8
6,196,934 + AO356_27185 0.62 -3.2
6,196,935 - AO356_27185 0.63 +0.1
6,196,951 - AO356_27185 0.64 -0.1
6,196,979 - AO356_27185 0.65 +1.1

Or see this region's nucleotide sequence