Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10065 and AO356_10070 are separated by 37 nucleotides AO356_10070 and AO356_10075 are separated by 150 nucleotides AO356_10075 and AO356_10080 overlap by 4 nucleotides
AO356_10065: AO356_10065 - Fis family transcriptional regulator, at 2,271,681 to 2,273,072
_10065
AO356_10070: AO356_10070 - thioesterase, at 2,273,110 to 2,273,565
_10070
AO356_10075: AO356_10075 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 2,273,716 to 2,274,543
_10075
AO356_10080: AO356_10080 - ADP-ribose diphosphatase, at 2,274,540 to 2,275,106
_10080
Position (kb)
2273
2274 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2272.596 kb on + strand, within AO356_10065 at 2272.596 kb on + strand, within AO356_10065 at 2272.596 kb on + strand, within AO356_10065 at 2272.596 kb on + strand, within AO356_10065 at 2272.597 kb on - strand, within AO356_10065 at 2272.597 kb on - strand, within AO356_10065 at 2272.597 kb on - strand, within AO356_10065 at 2272.597 kb on - strand, within AO356_10065 at 2272.666 kb on + strand, within AO356_10065 at 2272.666 kb on + strand, within AO356_10065 at 2272.667 kb on - strand, within AO356_10065 at 2272.667 kb on - strand, within AO356_10065 at 2273.075 kb on + strand at 2273.075 kb on + strand at 2273.075 kb on + strand at 2273.275 kb on + strand, within AO356_10070 at 2273.349 kb on + strand, within AO356_10070 at 2273.350 kb on - strand, within AO356_10070 at 2273.350 kb on - strand, within AO356_10070 at 2273.350 kb on - strand, within AO356_10070 at 2273.377 kb on + strand, within AO356_10070 at 2273.378 kb on - strand, within AO356_10070 at 2273.458 kb on + strand, within AO356_10070 at 2273.458 kb on + strand, within AO356_10070 at 2273.458 kb on + strand, within AO356_10070 at 2273.458 kb on + strand, within AO356_10070 at 2273.458 kb on + strand, within AO356_10070 at 2273.459 kb on - strand, within AO356_10070 at 2273.459 kb on - strand, within AO356_10070 at 2273.468 kb on - strand, within AO356_10070 at 2273.548 kb on + strand at 2273.548 kb on + strand at 2273.548 kb on + strand at 2273.548 kb on + strand at 2273.548 kb on + strand at 2273.548 kb on + strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.549 kb on - strand at 2273.591 kb on + strand at 2273.717 kb on + strand at 2273.784 kb on + strand at 2273.785 kb on - strand at 2273.785 kb on - strand at 2273.810 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.082 kb on + strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.083 kb on - strand, within AO356_10075 at 2274.099 kb on + strand, within AO356_10075 at 2274.100 kb on - strand, within AO356_10075 at 2274.158 kb on + strand, within AO356_10075 at 2274.159 kb on - strand, within AO356_10075 at 2274.225 kb on + strand, within AO356_10075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 2,272,596 + AO356_10065 0.66 +0.7 2,272,596 + AO356_10065 0.66 -0.8 2,272,596 + AO356_10065 0.66 +0.0 2,272,596 + AO356_10065 0.66 +0.9 2,272,597 - AO356_10065 0.66 -0.2 2,272,597 - AO356_10065 0.66 +1.2 2,272,597 - AO356_10065 0.66 +2.1 2,272,597 - AO356_10065 0.66 -1.2 2,272,666 + AO356_10065 0.71 +0.5 2,272,666 + AO356_10065 0.71 +1.1 2,272,667 - AO356_10065 0.71 -0.7 2,272,667 - AO356_10065 0.71 -0.8 2,273,075 + +0.6 2,273,075 + +0.9 2,273,075 + -0.5 2,273,275 + AO356_10070 0.36 +0.4 2,273,349 + AO356_10070 0.52 +0.4 2,273,350 - AO356_10070 0.53 +0.7 2,273,350 - AO356_10070 0.53 -0.1 2,273,350 - AO356_10070 0.53 -0.2 2,273,377 + AO356_10070 0.59 -0.2 2,273,378 - AO356_10070 0.59 +1.0 2,273,458 + AO356_10070 0.76 -0.2 2,273,458 + AO356_10070 0.76 +0.9 2,273,458 + AO356_10070 0.76 +1.4 2,273,458 + AO356_10070 0.76 +0.9 2,273,458 + AO356_10070 0.76 -0.6 2,273,459 - AO356_10070 0.77 +0.5 2,273,459 - AO356_10070 0.77 +0.2 2,273,468 - AO356_10070 0.79 -0.4 2,273,548 + -0.2 2,273,548 + -0.0 2,273,548 + -0.1 2,273,548 + +0.1 2,273,548 + +0.2 2,273,548 + +1.1 2,273,549 - +0.0 2,273,549 - +0.3 2,273,549 - -0.2 2,273,549 - +0.4 2,273,549 - +0.3 2,273,549 - +0.6 2,273,549 - -0.5 2,273,549 - -0.1 2,273,549 - +0.0 2,273,549 - -0.8 2,273,549 - -0.0 2,273,549 - +0.7 2,273,549 - +0.6 2,273,591 + -0.9 2,273,717 + +1.3 2,273,784 + -1.5 2,273,785 - -1.3 2,273,785 - -1.6 2,273,810 + AO356_10075 0.11 -1.1 2,274,082 + AO356_10075 0.44 -1.1 2,274,082 + AO356_10075 0.44 +0.6 2,274,082 + AO356_10075 0.44 -1.6 2,274,082 + AO356_10075 0.44 -0.8 2,274,082 + AO356_10075 0.44 -0.6 2,274,082 + AO356_10075 0.44 -0.4 2,274,082 + AO356_10075 0.44 +0.0 2,274,082 + AO356_10075 0.44 -0.3 2,274,082 + AO356_10075 0.44 -1.6 2,274,083 - AO356_10075 0.44 -2.0 2,274,083 - AO356_10075 0.44 -0.8 2,274,083 - AO356_10075 0.44 -1.9 2,274,083 - AO356_10075 0.44 -1.5 2,274,083 - AO356_10075 0.44 +0.0 2,274,083 - AO356_10075 0.44 -1.5 2,274,099 + AO356_10075 0.46 -1.5 2,274,100 - AO356_10075 0.46 -2.5 2,274,158 + AO356_10075 0.53 -2.2 2,274,159 - AO356_10075 0.54 -1.0 2,274,225 + AO356_10075 0.61 -1.9
Or see this region's nucleotide sequence