Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23110 and ABZR87_RS23115 are separated by 3 nucleotides ABZR87_RS23115 and ABZR87_RS23120 are separated by 344 nucleotides
ABZR87_RS23110: ABZR87_RS23110 - efflux transporter outer membrane subunit, at 1,546,886 to 1,548,355
_RS23110
ABZR87_RS23115: ABZR87_RS23115 - hypothetical protein, at 1,548,359 to 1,549,288
_RS23115
ABZR87_RS23120: ABZR87_RS23120 - D-aminoacylase, at 1,549,633 to 1,551,225
_RS23120
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1547.450 kb on + strand, within ABZR87_RS23110 at 1547.451 kb on - strand, within ABZR87_RS23110 at 1547.642 kb on + strand, within ABZR87_RS23110 at 1547.643 kb on - strand, within ABZR87_RS23110 at 1548.002 kb on + strand, within ABZR87_RS23110 at 1548.162 kb on - strand, within ABZR87_RS23110 at 1548.162 kb on - strand, within ABZR87_RS23110 at 1548.560 kb on + strand, within ABZR87_RS23115 at 1548.560 kb on + strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.840 kb on + strand, within ABZR87_RS23115 at 1548.840 kb on + strand, within ABZR87_RS23115 at 1548.841 kb on - strand, within ABZR87_RS23115 at 1548.841 kb on - strand, within ABZR87_RS23115 at 1548.873 kb on + strand, within ABZR87_RS23115 at 1548.874 kb on - strand, within ABZR87_RS23115 at 1549.020 kb on + strand, within ABZR87_RS23115 at 1549.234 kb on - strand at 1549.234 kb on - strand at 1549.390 kb on + strand at 1549.461 kb on + strand at 1549.461 kb on + strand at 1549.461 kb on + strand at 1549.462 kb on - strand at 1549.501 kb on + strand at 1549.512 kb on + strand at 1549.512 kb on + strand at 1549.512 kb on + strand at 1549.513 kb on - strand at 1549.513 kb on - strand at 1549.513 kb on - strand at 1549.558 kb on - strand at 1549.558 kb on - strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.603 kb on - strand at 1549.603 kb on - strand at 1549.632 kb on + strand at 1549.900 kb on - strand, within ABZR87_RS23120 at 1549.911 kb on + strand, within ABZR87_RS23120 at 1549.912 kb on - strand, within ABZR87_RS23120 at 1549.912 kb on - strand, within ABZR87_RS23120 at 1549.921 kb on + strand, within ABZR87_RS23120 at 1549.922 kb on - strand, within ABZR87_RS23120 at 1549.963 kb on + strand, within ABZR87_RS23120 at 1550.242 kb on + strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.245 kb on - strand, within ABZR87_RS23120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,547,450 + ABZR87_RS23110 0.38 -0.7 1,547,451 - ABZR87_RS23110 0.38 -0.1 1,547,642 + ABZR87_RS23110 0.51 +1.1 1,547,643 - ABZR87_RS23110 0.51 +0.5 1,548,002 + ABZR87_RS23110 0.76 +0.9 1,548,162 - ABZR87_RS23110 0.87 +0.2 1,548,162 - ABZR87_RS23110 0.87 -1.5 1,548,560 + ABZR87_RS23115 0.22 -0.4 1,548,560 + ABZR87_RS23115 0.22 -0.5 1,548,561 - ABZR87_RS23115 0.22 -0.3 1,548,561 - ABZR87_RS23115 0.22 +1.2 1,548,561 - ABZR87_RS23115 0.22 +0.6 1,548,561 - ABZR87_RS23115 0.22 +0.4 1,548,561 - ABZR87_RS23115 0.22 -1.5 1,548,618 + ABZR87_RS23115 0.28 -0.8 1,548,618 + ABZR87_RS23115 0.28 -2.1 1,548,618 + ABZR87_RS23115 0.28 +1.5 1,548,618 + ABZR87_RS23115 0.28 -1.4 1,548,618 + ABZR87_RS23115 0.28 -0.6 1,548,619 - ABZR87_RS23115 0.28 -0.7 1,548,619 - ABZR87_RS23115 0.28 +1.5 1,548,619 - ABZR87_RS23115 0.28 -0.2 1,548,619 - ABZR87_RS23115 0.28 -0.1 1,548,619 - ABZR87_RS23115 0.28 +1.3 1,548,619 - ABZR87_RS23115 0.28 -0.2 1,548,619 - ABZR87_RS23115 0.28 -1.5 1,548,840 + ABZR87_RS23115 0.52 +1.0 1,548,840 + ABZR87_RS23115 0.52 -1.2 1,548,841 - ABZR87_RS23115 0.52 -0.7 1,548,841 - ABZR87_RS23115 0.52 -0.6 1,548,873 + ABZR87_RS23115 0.55 +1.7 1,548,874 - ABZR87_RS23115 0.55 +0.6 1,549,020 + ABZR87_RS23115 0.71 -0.2 1,549,234 - +0.7 1,549,234 - -0.3 1,549,390 + +0.6 1,549,461 + -1.0 1,549,461 + -0.6 1,549,461 + +1.9 1,549,462 - +0.1 1,549,501 + +0.9 1,549,512 + +2.3 1,549,512 + -0.2 1,549,512 + +0.4 1,549,513 - -0.8 1,549,513 - +0.7 1,549,513 - -0.3 1,549,558 - +0.3 1,549,558 - +0.8 1,549,602 + -0.6 1,549,602 + +0.0 1,549,602 + +0.8 1,549,602 + -0.3 1,549,602 + +0.8 1,549,602 + -0.6 1,549,603 - -2.2 1,549,603 - -0.5 1,549,632 + -0.5 1,549,900 - ABZR87_RS23120 0.17 -0.5 1,549,911 + ABZR87_RS23120 0.17 +0.4 1,549,912 - ABZR87_RS23120 0.18 -1.1 1,549,912 - ABZR87_RS23120 0.18 +0.1 1,549,921 + ABZR87_RS23120 0.18 -0.2 1,549,922 - ABZR87_RS23120 0.18 -0.1 1,549,963 + ABZR87_RS23120 0.21 -0.3 1,550,242 + ABZR87_RS23120 0.38 -0.4 1,550,243 - ABZR87_RS23120 0.38 +0.9 1,550,243 - ABZR87_RS23120 0.38 -0.6 1,550,243 - ABZR87_RS23120 0.38 +0.4 1,550,243 - ABZR87_RS23120 0.38 +0.7 1,550,243 - ABZR87_RS23120 0.38 +0.7 1,550,244 + ABZR87_RS23120 0.38 +0.2 1,550,244 + ABZR87_RS23120 0.38 +0.1 1,550,244 + ABZR87_RS23120 0.38 -0.5 1,550,244 + ABZR87_RS23120 0.38 -0.8 1,550,245 - ABZR87_RS23120 0.38 -0.0
Or see this region's nucleotide sequence