Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20810

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20805 and ABZR87_RS20810 are separated by 83 nucleotidesABZR87_RS20810 and ABZR87_RS20815 are separated by 4 nucleotides ABZR87_RS20805: ABZR87_RS20805 - DNA-binding transcriptional regulator KdgR, at 1,054,100 to 1,054,951 _RS20805 ABZR87_RS20810: ABZR87_RS20810 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,055,035 to 1,055,820 _RS20810 ABZR87_RS20815: ABZR87_RS20815 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,055,825 to 1,056,661 _RS20815 Position (kb) 1055 1056Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1054.070 kb on + strandat 1054.071 kb on - strandat 1054.071 kb on - strandat 1054.182 kb on + strandat 1054.182 kb on + strandat 1054.183 kb on - strandat 1054.183 kb on - strandat 1054.183 kb on - strandat 1054.443 kb on + strand, within ABZR87_RS20805at 1054.443 kb on + strand, within ABZR87_RS20805at 1054.444 kb on - strand, within ABZR87_RS20805at 1054.522 kb on - strand, within ABZR87_RS20805at 1054.545 kb on + strand, within ABZR87_RS20805at 1054.545 kb on + strand, within ABZR87_RS20805at 1054.545 kb on + strand, within ABZR87_RS20805at 1054.545 kb on + strand, within ABZR87_RS20805at 1054.545 kb on + strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.546 kb on - strand, within ABZR87_RS20805at 1054.725 kb on + strand, within ABZR87_RS20805at 1054.879 kb on + strandat 1054.880 kb on - strandat 1054.880 kb on - strandat 1054.895 kb on + strandat 1055.003 kb on - strandat 1055.029 kb on - strandat 1055.084 kb on + strandat 1055.228 kb on + strand, within ABZR87_RS20810at 1055.228 kb on + strand, within ABZR87_RS20810at 1055.228 kb on + strand, within ABZR87_RS20810at 1055.324 kb on + strand, within ABZR87_RS20810at 1055.324 kb on + strand, within ABZR87_RS20810at 1055.324 kb on + strand, within ABZR87_RS20810at 1055.731 kb on + strand, within ABZR87_RS20810at 1055.801 kb on + strandat 1055.802 kb on - strandat 1055.802 kb on - strandat 1055.904 kb on + strandat 1055.904 kb on + strandat 1055.904 kb on + strandat 1055.904 kb on + strandat 1055.905 kb on - strandat 1055.905 kb on - strandat 1055.905 kb on - strandat 1055.905 kb on - strandat 1056.043 kb on - strand, within ABZR87_RS20815at 1056.048 kb on + strand, within ABZR87_RS20815at 1056.048 kb on + strand, within ABZR87_RS20815at 1056.048 kb on + strand, within ABZR87_RS20815at 1056.048 kb on + strand, within ABZR87_RS20815at 1056.049 kb on - strand, within ABZR87_RS20815at 1056.049 kb on - strand, within ABZR87_RS20815at 1056.171 kb on + strand, within ABZR87_RS20815at 1056.171 kb on + strand, within ABZR87_RS20815at 1056.253 kb on - strand, within ABZR87_RS20815at 1056.283 kb on - strand, within ABZR87_RS20815at 1056.283 kb on - strand, within ABZR87_RS20815at 1056.283 kb on - strand, within ABZR87_RS20815at 1056.283 kb on - strand, within ABZR87_RS20815at 1056.348 kb on + strand, within ABZR87_RS20815at 1056.348 kb on + strand, within ABZR87_RS20815at 1056.348 kb on + strand, within ABZR87_RS20815at 1056.349 kb on - strand, within ABZR87_RS20815at 1056.546 kb on + strand, within ABZR87_RS20815at 1056.546 kb on + strand, within ABZR87_RS20815at 1056.546 kb on + strand, within ABZR87_RS20815at 1056.547 kb on - strand, within ABZR87_RS20815at 1056.547 kb on - strand, within ABZR87_RS20815at 1056.547 kb on - strand, within ABZR87_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,054,070 + +1.0
1,054,071 - -0.4
1,054,071 - +0.2
1,054,182 + -1.2
1,054,182 + -0.2
1,054,183 - +0.3
1,054,183 - +0.2
1,054,183 - +0.7
1,054,443 + ABZR87_RS20805 0.40 -1.7
1,054,443 + ABZR87_RS20805 0.40 +0.1
1,054,444 - ABZR87_RS20805 0.40 +1.1
1,054,522 - ABZR87_RS20805 0.50 +0.4
1,054,545 + ABZR87_RS20805 0.52 -1.6
1,054,545 + ABZR87_RS20805 0.52 -2.4
1,054,545 + ABZR87_RS20805 0.52 -0.8
1,054,545 + ABZR87_RS20805 0.52 +0.4
1,054,545 + ABZR87_RS20805 0.52 -2.2
1,054,546 - ABZR87_RS20805 0.52 +0.7
1,054,546 - ABZR87_RS20805 0.52 -0.3
1,054,546 - ABZR87_RS20805 0.52 +0.2
1,054,546 - ABZR87_RS20805 0.52 +0.3
1,054,546 - ABZR87_RS20805 0.52 +0.1
1,054,546 - ABZR87_RS20805 0.52 +0.4
1,054,546 - ABZR87_RS20805 0.52 -1.8
1,054,546 - ABZR87_RS20805 0.52 +0.1
1,054,546 - ABZR87_RS20805 0.52 -1.9
1,054,725 + ABZR87_RS20805 0.73 +3.8
1,054,879 + +0.9
1,054,880 - +1.4
1,054,880 - -1.1
1,054,895 + +1.1
1,055,003 - +0.4
1,055,029 - -0.1
1,055,084 + -0.5
1,055,228 + ABZR87_RS20810 0.25 -0.3
1,055,228 + ABZR87_RS20810 0.25 -0.8
1,055,228 + ABZR87_RS20810 0.25 +0.4
1,055,324 + ABZR87_RS20810 0.37 -0.1
1,055,324 + ABZR87_RS20810 0.37 -0.5
1,055,324 + ABZR87_RS20810 0.37 -2.0
1,055,731 + ABZR87_RS20810 0.89 -0.8
1,055,801 + +0.0
1,055,802 - +0.6
1,055,802 - +2.0
1,055,904 + -0.2
1,055,904 + -0.4
1,055,904 + +1.0
1,055,904 + -0.2
1,055,905 - -0.4
1,055,905 - -0.7
1,055,905 - +0.8
1,055,905 - -1.3
1,056,043 - ABZR87_RS20815 0.26 +0.0
1,056,048 + ABZR87_RS20815 0.27 +0.6
1,056,048 + ABZR87_RS20815 0.27 -0.8
1,056,048 + ABZR87_RS20815 0.27 +1.6
1,056,048 + ABZR87_RS20815 0.27 +1.4
1,056,049 - ABZR87_RS20815 0.27 +1.8
1,056,049 - ABZR87_RS20815 0.27 -0.8
1,056,171 + ABZR87_RS20815 0.41 +0.6
1,056,171 + ABZR87_RS20815 0.41 +0.4
1,056,253 - ABZR87_RS20815 0.51 -2.6
1,056,283 - ABZR87_RS20815 0.55 -1.2
1,056,283 - ABZR87_RS20815 0.55 +0.3
1,056,283 - ABZR87_RS20815 0.55 -0.0
1,056,283 - ABZR87_RS20815 0.55 -2.0
1,056,348 + ABZR87_RS20815 0.62 -1.5
1,056,348 + ABZR87_RS20815 0.62 -1.3
1,056,348 + ABZR87_RS20815 0.62 -1.0
1,056,349 - ABZR87_RS20815 0.63 -0.3
1,056,546 + ABZR87_RS20815 0.86 +0.2
1,056,546 + ABZR87_RS20815 0.86 -0.8
1,056,546 + ABZR87_RS20815 0.86 -2.3
1,056,547 - ABZR87_RS20815 0.86 +0.1
1,056,547 - ABZR87_RS20815 0.86 +5.3
1,056,547 - ABZR87_RS20815 0.86 -0.7

Or see this region's nucleotide sequence