Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20805 and ABZR87_RS20810 are separated by 83 nucleotides ABZR87_RS20810 and ABZR87_RS20815 are separated by 4 nucleotides
ABZR87_RS20805: ABZR87_RS20805 - DNA-binding transcriptional regulator KdgR, at 1,054,100 to 1,054,951
_RS20805
ABZR87_RS20810: ABZR87_RS20810 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,055,035 to 1,055,820
_RS20810
ABZR87_RS20815: ABZR87_RS20815 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,055,825 to 1,056,661
_RS20815
Position (kb)
1055
1056 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1054.070 kb on + strand at 1054.071 kb on - strand at 1054.071 kb on - strand at 1054.182 kb on + strand at 1054.182 kb on + strand at 1054.183 kb on - strand at 1054.183 kb on - strand at 1054.183 kb on - strand at 1054.443 kb on + strand, within ABZR87_RS20805 at 1054.443 kb on + strand, within ABZR87_RS20805 at 1054.444 kb on - strand, within ABZR87_RS20805 at 1054.522 kb on - strand, within ABZR87_RS20805 at 1054.545 kb on + strand, within ABZR87_RS20805 at 1054.545 kb on + strand, within ABZR87_RS20805 at 1054.545 kb on + strand, within ABZR87_RS20805 at 1054.545 kb on + strand, within ABZR87_RS20805 at 1054.545 kb on + strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.546 kb on - strand, within ABZR87_RS20805 at 1054.725 kb on + strand, within ABZR87_RS20805 at 1054.879 kb on + strand at 1054.880 kb on - strand at 1054.880 kb on - strand at 1054.895 kb on + strand at 1055.003 kb on - strand at 1055.029 kb on - strand at 1055.084 kb on + strand at 1055.228 kb on + strand, within ABZR87_RS20810 at 1055.228 kb on + strand, within ABZR87_RS20810 at 1055.228 kb on + strand, within ABZR87_RS20810 at 1055.324 kb on + strand, within ABZR87_RS20810 at 1055.324 kb on + strand, within ABZR87_RS20810 at 1055.324 kb on + strand, within ABZR87_RS20810 at 1055.731 kb on + strand, within ABZR87_RS20810 at 1055.801 kb on + strand at 1055.802 kb on - strand at 1055.802 kb on - strand at 1055.904 kb on + strand at 1055.904 kb on + strand at 1055.904 kb on + strand at 1055.904 kb on + strand at 1055.905 kb on - strand at 1055.905 kb on - strand at 1055.905 kb on - strand at 1055.905 kb on - strand at 1056.043 kb on - strand, within ABZR87_RS20815 at 1056.048 kb on + strand, within ABZR87_RS20815 at 1056.048 kb on + strand, within ABZR87_RS20815 at 1056.048 kb on + strand, within ABZR87_RS20815 at 1056.048 kb on + strand, within ABZR87_RS20815 at 1056.049 kb on - strand, within ABZR87_RS20815 at 1056.049 kb on - strand, within ABZR87_RS20815 at 1056.171 kb on + strand, within ABZR87_RS20815 at 1056.171 kb on + strand, within ABZR87_RS20815 at 1056.253 kb on - strand, within ABZR87_RS20815 at 1056.283 kb on - strand, within ABZR87_RS20815 at 1056.283 kb on - strand, within ABZR87_RS20815 at 1056.283 kb on - strand, within ABZR87_RS20815 at 1056.283 kb on - strand, within ABZR87_RS20815 at 1056.348 kb on + strand, within ABZR87_RS20815 at 1056.348 kb on + strand, within ABZR87_RS20815 at 1056.348 kb on + strand, within ABZR87_RS20815 at 1056.349 kb on - strand, within ABZR87_RS20815 at 1056.546 kb on + strand, within ABZR87_RS20815 at 1056.546 kb on + strand, within ABZR87_RS20815 at 1056.546 kb on + strand, within ABZR87_RS20815 at 1056.547 kb on - strand, within ABZR87_RS20815 at 1056.547 kb on - strand, within ABZR87_RS20815 at 1056.547 kb on - strand, within ABZR87_RS20815
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,054,070 + +1.0 1,054,071 - -0.4 1,054,071 - +0.2 1,054,182 + -1.2 1,054,182 + -0.2 1,054,183 - +0.3 1,054,183 - +0.2 1,054,183 - +0.7 1,054,443 + ABZR87_RS20805 0.40 -1.7 1,054,443 + ABZR87_RS20805 0.40 +0.1 1,054,444 - ABZR87_RS20805 0.40 +1.1 1,054,522 - ABZR87_RS20805 0.50 +0.4 1,054,545 + ABZR87_RS20805 0.52 -1.6 1,054,545 + ABZR87_RS20805 0.52 -2.4 1,054,545 + ABZR87_RS20805 0.52 -0.8 1,054,545 + ABZR87_RS20805 0.52 +0.4 1,054,545 + ABZR87_RS20805 0.52 -2.2 1,054,546 - ABZR87_RS20805 0.52 +0.7 1,054,546 - ABZR87_RS20805 0.52 -0.3 1,054,546 - ABZR87_RS20805 0.52 +0.2 1,054,546 - ABZR87_RS20805 0.52 +0.3 1,054,546 - ABZR87_RS20805 0.52 +0.1 1,054,546 - ABZR87_RS20805 0.52 +0.4 1,054,546 - ABZR87_RS20805 0.52 -1.8 1,054,546 - ABZR87_RS20805 0.52 +0.1 1,054,546 - ABZR87_RS20805 0.52 -1.9 1,054,725 + ABZR87_RS20805 0.73 +3.8 1,054,879 + +0.9 1,054,880 - +1.4 1,054,880 - -1.1 1,054,895 + +1.1 1,055,003 - +0.4 1,055,029 - -0.1 1,055,084 + -0.5 1,055,228 + ABZR87_RS20810 0.25 -0.3 1,055,228 + ABZR87_RS20810 0.25 -0.8 1,055,228 + ABZR87_RS20810 0.25 +0.4 1,055,324 + ABZR87_RS20810 0.37 -0.1 1,055,324 + ABZR87_RS20810 0.37 -0.5 1,055,324 + ABZR87_RS20810 0.37 -2.0 1,055,731 + ABZR87_RS20810 0.89 -0.8 1,055,801 + +0.0 1,055,802 - +0.6 1,055,802 - +2.0 1,055,904 + -0.2 1,055,904 + -0.4 1,055,904 + +1.0 1,055,904 + -0.2 1,055,905 - -0.4 1,055,905 - -0.7 1,055,905 - +0.8 1,055,905 - -1.3 1,056,043 - ABZR87_RS20815 0.26 +0.0 1,056,048 + ABZR87_RS20815 0.27 +0.6 1,056,048 + ABZR87_RS20815 0.27 -0.8 1,056,048 + ABZR87_RS20815 0.27 +1.6 1,056,048 + ABZR87_RS20815 0.27 +1.4 1,056,049 - ABZR87_RS20815 0.27 +1.8 1,056,049 - ABZR87_RS20815 0.27 -0.8 1,056,171 + ABZR87_RS20815 0.41 +0.6 1,056,171 + ABZR87_RS20815 0.41 +0.4 1,056,253 - ABZR87_RS20815 0.51 -2.6 1,056,283 - ABZR87_RS20815 0.55 -1.2 1,056,283 - ABZR87_RS20815 0.55 +0.3 1,056,283 - ABZR87_RS20815 0.55 -0.0 1,056,283 - ABZR87_RS20815 0.55 -2.0 1,056,348 + ABZR87_RS20815 0.62 -1.5 1,056,348 + ABZR87_RS20815 0.62 -1.3 1,056,348 + ABZR87_RS20815 0.62 -1.0 1,056,349 - ABZR87_RS20815 0.63 -0.3 1,056,546 + ABZR87_RS20815 0.86 +0.2 1,056,546 + ABZR87_RS20815 0.86 -0.8 1,056,546 + ABZR87_RS20815 0.86 -2.3 1,056,547 - ABZR87_RS20815 0.86 +0.1 1,056,547 - ABZR87_RS20815 0.86 +5.3 1,056,547 - ABZR87_RS20815 0.86 -0.7
Or see this region's nucleotide sequence