Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20200

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20195 and ABZR87_RS20200 are separated by 12 nucleotidesABZR87_RS20200 and ABZR87_RS20205 overlap by 4 nucleotides ABZR87_RS20195: ABZR87_RS20195 - T6SS effector BTH_I2691 family protein, at 913,370 to 916,006 _RS20195 ABZR87_RS20200: ABZR87_RS20200 - DUF4123 domain-containing protein, at 916,019 to 917,155 _RS20200 ABZR87_RS20205: ABZR87_RS20205 - type VI secretion system Vgr family protein, at 917,152 to 919,911 _RS20205 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 915.028 kb on - strand, within ABZR87_RS20195at 915.040 kb on + strand, within ABZR87_RS20195at 915.053 kb on - strand, within ABZR87_RS20195at 915.090 kb on + strand, within ABZR87_RS20195at 915.090 kb on + strand, within ABZR87_RS20195at 915.091 kb on - strand, within ABZR87_RS20195at 915.113 kb on + strand, within ABZR87_RS20195at 915.113 kb on + strand, within ABZR87_RS20195at 915.113 kb on + strand, within ABZR87_RS20195at 915.113 kb on + strand, within ABZR87_RS20195at 915.113 kb on + strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.114 kb on - strand, within ABZR87_RS20195at 915.161 kb on + strand, within ABZR87_RS20195at 915.228 kb on + strand, within ABZR87_RS20195at 915.229 kb on - strand, within ABZR87_RS20195at 915.229 kb on - strand, within ABZR87_RS20195at 915.229 kb on - strand, within ABZR87_RS20195at 915.229 kb on - strand, within ABZR87_RS20195at 915.229 kb on - strand, within ABZR87_RS20195at 915.253 kb on + strand, within ABZR87_RS20195at 915.254 kb on - strand, within ABZR87_RS20195at 915.279 kb on + strand, within ABZR87_RS20195at 915.349 kb on + strand, within ABZR87_RS20195at 915.366 kb on + strand, within ABZR87_RS20195at 915.366 kb on + strand, within ABZR87_RS20195at 915.366 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.389 kb on + strand, within ABZR87_RS20195at 915.390 kb on - strand, within ABZR87_RS20195at 915.390 kb on - strand, within ABZR87_RS20195at 915.392 kb on + strand, within ABZR87_RS20195at 915.393 kb on - strand, within ABZR87_RS20195at 915.393 kb on - strand, within ABZR87_RS20195at 915.393 kb on - strand, within ABZR87_RS20195at 915.513 kb on + strand, within ABZR87_RS20195at 915.513 kb on + strand, within ABZR87_RS20195at 915.555 kb on + strand, within ABZR87_RS20195at 915.555 kb on + strand, within ABZR87_RS20195at 915.555 kb on + strand, within ABZR87_RS20195at 915.555 kb on + strand, within ABZR87_RS20195at 915.555 kb on + strand, within ABZR87_RS20195at 915.556 kb on - strand, within ABZR87_RS20195at 915.556 kb on - strand, within ABZR87_RS20195at 915.556 kb on - strand, within ABZR87_RS20195at 915.582 kb on + strand, within ABZR87_RS20195at 915.582 kb on + strand, within ABZR87_RS20195at 915.582 kb on + strand, within ABZR87_RS20195at 915.583 kb on - strand, within ABZR87_RS20195at 915.711 kb on + strand, within ABZR87_RS20195at 915.712 kb on - strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.732 kb on + strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.733 kb on - strand, within ABZR87_RS20195at 915.780 kb on + strandat 915.780 kb on + strandat 915.780 kb on + strandat 915.781 kb on - strandat 915.781 kb on - strandat 915.786 kb on + strandat 915.786 kb on + strandat 915.787 kb on - strandat 915.793 kb on - strandat 915.793 kb on - strandat 915.812 kb on + strandat 915.812 kb on + strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.813 kb on - strandat 915.817 kb on + strandat 915.818 kb on - strandat 915.818 kb on - strandat 915.818 kb on - strandat 915.818 kb on - strandat 915.819 kb on + strandat 915.819 kb on + strandat 915.820 kb on - strandat 915.820 kb on - strandat 915.860 kb on + strandat 915.860 kb on + strandat 915.861 kb on - strandat 915.861 kb on - strandat 915.918 kb on + strandat 915.919 kb on - strandat 915.919 kb on - strandat 915.919 kb on - strandat 915.919 kb on - strandat 915.919 kb on - strandat 915.931 kb on - strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.947 kb on - strandat 915.947 kb on - strandat 916.036 kb on - strandat 916.036 kb on - strandat 916.076 kb on - strandat 916.139 kb on + strand, within ABZR87_RS20200at 916.244 kb on + strand, within ABZR87_RS20200at 916.244 kb on + strand, within ABZR87_RS20200at 916.245 kb on - strand, within ABZR87_RS20200at 916.245 kb on - strand, within ABZR87_RS20200at 916.317 kb on - strand, within ABZR87_RS20200at 916.379 kb on - strand, within ABZR87_RS20200at 916.402 kb on + strand, within ABZR87_RS20200at 916.456 kb on + strand, within ABZR87_RS20200at 916.456 kb on + strand, within ABZR87_RS20200at 916.457 kb on - strand, within ABZR87_RS20200at 916.628 kb on + strand, within ABZR87_RS20200at 916.629 kb on - strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.687 kb on + strand, within ABZR87_RS20200at 916.687 kb on + strand, within ABZR87_RS20200at 916.707 kb on + strand, within ABZR87_RS20200at 916.707 kb on + strand, within ABZR87_RS20200at 916.708 kb on - strand, within ABZR87_RS20200at 916.742 kb on - strand, within ABZR87_RS20200at 916.806 kb on - strand, within ABZR87_RS20200at 916.869 kb on + strand, within ABZR87_RS20200at 916.869 kb on + strand, within ABZR87_RS20200at 916.903 kb on + strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.945 kb on + strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.971 kb on + strand, within ABZR87_RS20200at 916.971 kb on + strand, within ABZR87_RS20200at 916.972 kb on - strand, within ABZR87_RS20200at 916.972 kb on - strand, within ABZR87_RS20200at 917.019 kb on + strand, within ABZR87_RS20200at 917.052 kb on + strandat 917.052 kb on + strandat 917.053 kb on - strandat 917.053 kb on - strandat 917.108 kb on + strandat 917.108 kb on + strandat 917.108 kb on + strandat 917.191 kb on - strandat 917.191 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.287 kb on - strandat 917.287 kb on - strandat 918.141 kb on - strand, within ABZR87_RS20205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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915,028 - ABZR87_RS20195 0.63 -0.2
915,040 + ABZR87_RS20195 0.63 -1.1
915,053 - ABZR87_RS20195 0.64 -0.7
915,090 + ABZR87_RS20195 0.65 +0.7
915,090 + ABZR87_RS20195 0.65 +1.1
915,091 - ABZR87_RS20195 0.65 -0.1
915,113 + ABZR87_RS20195 0.66 -0.6
915,113 + ABZR87_RS20195 0.66 +0.1
915,113 + ABZR87_RS20195 0.66 +0.6
915,113 + ABZR87_RS20195 0.66 +0.0
915,113 + ABZR87_RS20195 0.66 -0.1
915,114 - ABZR87_RS20195 0.66 +0.7
915,114 - ABZR87_RS20195 0.66 +1.2
915,114 - ABZR87_RS20195 0.66 -0.3
915,114 - ABZR87_RS20195 0.66 -1.1
915,114 - ABZR87_RS20195 0.66 +0.5
915,114 - ABZR87_RS20195 0.66 -0.6
915,114 - ABZR87_RS20195 0.66 +0.7
915,114 - ABZR87_RS20195 0.66 -1.1
915,114 - ABZR87_RS20195 0.66 -1.3
915,114 - ABZR87_RS20195 0.66 +0.7
915,114 - ABZR87_RS20195 0.66 +1.3
915,161 + ABZR87_RS20195 0.68 -0.2
915,228 + ABZR87_RS20195 0.70 -0.4
915,229 - ABZR87_RS20195 0.70 -0.7
915,229 - ABZR87_RS20195 0.70 +0.2
915,229 - ABZR87_RS20195 0.70 -0.9
915,229 - ABZR87_RS20195 0.70 +0.3
915,229 - ABZR87_RS20195 0.70 +0.8
915,253 + ABZR87_RS20195 0.71 +0.8
915,254 - ABZR87_RS20195 0.71 +0.4
915,279 + ABZR87_RS20195 0.72 +0.3
915,349 + ABZR87_RS20195 0.75 +0.5
915,366 + ABZR87_RS20195 0.76 +2.0
915,366 + ABZR87_RS20195 0.76 -0.3
915,366 + ABZR87_RS20195 0.76 +0.3
915,389 + ABZR87_RS20195 0.77 +0.2
915,389 + ABZR87_RS20195 0.77 +0.1
915,389 + ABZR87_RS20195 0.77 -0.3
915,389 + ABZR87_RS20195 0.77 -0.2
915,389 + ABZR87_RS20195 0.77 -0.2
915,389 + ABZR87_RS20195 0.77 +1.2
915,390 - ABZR87_RS20195 0.77 -0.0
915,390 - ABZR87_RS20195 0.77 +0.8
915,392 + ABZR87_RS20195 0.77 -0.7
915,393 - ABZR87_RS20195 0.77 -0.3
915,393 - ABZR87_RS20195 0.77 +0.6
915,393 - ABZR87_RS20195 0.77 -0.4
915,513 + ABZR87_RS20195 0.81 +0.4
915,513 + ABZR87_RS20195 0.81 -0.5
915,555 + ABZR87_RS20195 0.83 -0.3
915,555 + ABZR87_RS20195 0.83 -0.2
915,555 + ABZR87_RS20195 0.83 +0.2
915,555 + ABZR87_RS20195 0.83 -1.3
915,555 + ABZR87_RS20195 0.83 +0.1
915,556 - ABZR87_RS20195 0.83 +0.2
915,556 - ABZR87_RS20195 0.83 +0.4
915,556 - ABZR87_RS20195 0.83 +0.9
915,582 + ABZR87_RS20195 0.84 +0.5
915,582 + ABZR87_RS20195 0.84 -0.6
915,582 + ABZR87_RS20195 0.84 -1.7
915,583 - ABZR87_RS20195 0.84 +0.6
915,711 + ABZR87_RS20195 0.89 +1.6
915,712 - ABZR87_RS20195 0.89 +0.4
915,732 + ABZR87_RS20195 0.90 +0.5
915,732 + ABZR87_RS20195 0.90 -0.4
915,732 + ABZR87_RS20195 0.90 -1.1
915,732 + ABZR87_RS20195 0.90 +0.1
915,732 + ABZR87_RS20195 0.90 +1.1
915,732 + ABZR87_RS20195 0.90 -0.2
915,732 + ABZR87_RS20195 0.90 -0.1
915,732 + ABZR87_RS20195 0.90 +0.4
915,732 + ABZR87_RS20195 0.90 -1.7
915,732 + ABZR87_RS20195 0.90 -0.2
915,733 - ABZR87_RS20195 0.90 +2.0
915,733 - ABZR87_RS20195 0.90 -0.2
915,733 - ABZR87_RS20195 0.90 +0.4
915,733 - ABZR87_RS20195 0.90 +0.6
915,733 - ABZR87_RS20195 0.90 +0.1
915,733 - ABZR87_RS20195 0.90 -1.8
915,733 - ABZR87_RS20195 0.90 +1.1
915,733 - ABZR87_RS20195 0.90 -0.6
915,733 - ABZR87_RS20195 0.90 -0.0
915,780 + -0.9
915,780 + -1.8
915,780 + +0.2
915,781 - +0.6
915,781 - +1.5
915,786 + +1.1
915,786 + +0.2
915,787 - -0.6
915,793 - -2.0
915,793 - -0.4
915,812 + +0.4
915,812 + -0.6
915,813 - -1.2
915,813 - -1.0
915,813 - -1.0
915,813 - +0.0
915,813 - +0.1
915,813 - -0.9
915,813 - +0.1
915,813 - +0.2
915,817 + +1.5
915,818 - +0.1
915,818 - +0.1
915,818 - +0.6
915,818 - -0.3
915,819 + -0.3
915,819 + -0.2
915,820 - +0.3
915,820 - -2.2
915,860 + +0.5
915,860 + +1.0
915,861 - -0.5
915,861 - +0.3
915,918 + +0.2
915,919 - +1.2
915,919 - +0.5
915,919 - +0.1
915,919 - +0.2
915,919 - -2.1
915,931 - -1.0
915,946 + -0.4
915,946 + +1.7
915,946 + +0.0
915,947 - -0.4
915,947 - -0.6
916,036 - +0.9
916,036 - -1.0
916,076 - +1.1
916,139 + ABZR87_RS20200 0.11 +1.9
916,244 + ABZR87_RS20200 0.20 +0.2
916,244 + ABZR87_RS20200 0.20 -0.2
916,245 - ABZR87_RS20200 0.20 -0.6
916,245 - ABZR87_RS20200 0.20 -0.8
916,317 - ABZR87_RS20200 0.26 +0.7
916,379 - ABZR87_RS20200 0.32 +0.3
916,402 + ABZR87_RS20200 0.34 -0.9
916,456 + ABZR87_RS20200 0.38 -1.9
916,456 + ABZR87_RS20200 0.38 +0.0
916,457 - ABZR87_RS20200 0.39 +0.9
916,628 + ABZR87_RS20200 0.54 -0.3
916,629 - ABZR87_RS20200 0.54 -1.0
916,632 + ABZR87_RS20200 0.54 +0.4
916,632 + ABZR87_RS20200 0.54 -0.4
916,632 + ABZR87_RS20200 0.54 +0.2
916,633 - ABZR87_RS20200 0.54 -0.5
916,633 - ABZR87_RS20200 0.54 +0.0
916,633 - ABZR87_RS20200 0.54 -1.2
916,633 - ABZR87_RS20200 0.54 -0.4
916,633 - ABZR87_RS20200 0.54 +0.7
916,633 - ABZR87_RS20200 0.54 -0.5
916,633 - ABZR87_RS20200 0.54 -1.0
916,633 - ABZR87_RS20200 0.54 -0.1
916,687 + ABZR87_RS20200 0.59 +1.2
916,687 + ABZR87_RS20200 0.59 +1.7
916,707 + ABZR87_RS20200 0.61 -0.6
916,707 + ABZR87_RS20200 0.61 +0.2
916,708 - ABZR87_RS20200 0.61 +0.2
916,742 - ABZR87_RS20200 0.64 -0.3
916,806 - ABZR87_RS20200 0.69 -0.1
916,869 + ABZR87_RS20200 0.75 -1.0
916,869 + ABZR87_RS20200 0.75 +0.1
916,903 + ABZR87_RS20200 0.78 +1.0
916,904 - ABZR87_RS20200 0.78 +1.9
916,904 - ABZR87_RS20200 0.78 +0.1
916,904 - ABZR87_RS20200 0.78 +0.3
916,904 - ABZR87_RS20200 0.78 -1.4
916,904 - ABZR87_RS20200 0.78 -0.1
916,945 + ABZR87_RS20200 0.81 -0.5
916,946 - ABZR87_RS20200 0.82 -1.0
916,946 - ABZR87_RS20200 0.82 -1.5
916,946 - ABZR87_RS20200 0.82 -1.4
916,971 + ABZR87_RS20200 0.84 -0.7
916,971 + ABZR87_RS20200 0.84 +0.8
916,972 - ABZR87_RS20200 0.84 -0.4
916,972 - ABZR87_RS20200 0.84 +0.1
917,019 + ABZR87_RS20200 0.88 -1.5
917,052 + +0.1
917,052 + -0.9
917,053 - +0.1
917,053 - +0.5
917,108 + -1.3
917,108 + -0.6
917,108 + +1.1
917,191 - -0.1
917,191 - -0.4
917,239 - -0.1
917,239 - -1.0
917,239 - -1.2
917,239 - +0.3
917,239 - +0.5
917,287 - +3.7
917,287 - +0.6
918,141 - ABZR87_RS20205 0.36 -1.1

Or see this region's nucleotide sequence