Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16335

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16330 and ABZR87_RS16335 are separated by 10 nucleotidesABZR87_RS16335 and ABZR87_RS16340 are separated by 7 nucleotidesABZR87_RS16340 and ABZR87_RS16345 overlap by 4 nucleotides ABZR87_RS16330: ABZR87_RS16330 - branched-chain amino acid ABC transporter permease, at 16,600 to 17,481 _RS16330 ABZR87_RS16335: ABZR87_RS16335 - branched-chain amino acid ABC transporter permease, at 17,492 to 18,400 _RS16335 ABZR87_RS16340: ABZR87_RS16340 - ABC transporter ATP-binding protein, at 18,408 to 19,205 _RS16340 ABZR87_RS16345: ABZR87_RS16345 - ABC transporter ATP-binding protein, at 19,202 to 19,927 _RS16345 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1 2at 16.514 kb on + strandat 16.514 kb on + strandat 16.518 kb on + strandat 16.518 kb on + strandat 16.519 kb on - strandat 16.519 kb on - strandat 16.519 kb on - strandat 16.524 kb on + strandat 16.524 kb on + strandat 16.645 kb on + strandat 16.645 kb on + strandat 16.645 kb on + strandat 16.646 kb on - strandat 16.646 kb on - strandat 16.646 kb on - strandat 16.646 kb on - strandat 16.735 kb on + strand, within ABZR87_RS16330at 16.736 kb on - strand, within ABZR87_RS16330at 17.230 kb on + strand, within ABZR87_RS16330at 17.230 kb on + strand, within ABZR87_RS16330at 17.231 kb on - strand, within ABZR87_RS16330at 17.231 kb on - strand, within ABZR87_RS16330at 17.374 kb on + strand, within ABZR87_RS16330at 17.374 kb on + strand, within ABZR87_RS16330at 17.374 kb on + strand, within ABZR87_RS16330at 17.375 kb on - strand, within ABZR87_RS16330at 17.375 kb on - strand, within ABZR87_RS16330at 17.479 kb on + strandat 17.480 kb on - strandat 17.577 kb on - strandat 17.639 kb on + strand, within ABZR87_RS16335at 17.639 kb on + strand, within ABZR87_RS16335at 17.639 kb on + strand, within ABZR87_RS16335at 17.766 kb on - strand, within ABZR87_RS16335at 17.995 kb on + strand, within ABZR87_RS16335at 17.996 kb on - strand, within ABZR87_RS16335at 18.019 kb on + strand, within ABZR87_RS16335at 18.019 kb on + strand, within ABZR87_RS16335at 18.019 kb on + strand, within ABZR87_RS16335at 18.019 kb on + strand, within ABZR87_RS16335at 18.019 kb on + strand, within ABZR87_RS16335at 18.020 kb on - strand, within ABZR87_RS16335at 18.020 kb on - strand, within ABZR87_RS16335at 18.726 kb on + strand, within ABZR87_RS16340at 18.726 kb on + strand, within ABZR87_RS16340at 19.073 kb on + strand, within ABZR87_RS16340at 19.143 kb on + strandat 19.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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16,514 + -0.1
16,514 + -0.5
16,518 + +0.7
16,518 + -0.7
16,519 - +0.4
16,519 - +0.1
16,519 - -0.4
16,524 + -0.1
16,524 + +0.2
16,645 + +0.1
16,645 + -0.4
16,645 + +0.3
16,646 - -0.6
16,646 - +1.0
16,646 - +0.2
16,646 - -0.3
16,735 + ABZR87_RS16330 0.15 +0.3
16,736 - ABZR87_RS16330 0.15 -0.7
17,230 + ABZR87_RS16330 0.71 -0.0
17,230 + ABZR87_RS16330 0.71 +0.3
17,231 - ABZR87_RS16330 0.72 +0.7
17,231 - ABZR87_RS16330 0.72 +2.0
17,374 + ABZR87_RS16330 0.88 -1.9
17,374 + ABZR87_RS16330 0.88 +0.6
17,374 + ABZR87_RS16330 0.88 +1.6
17,375 - ABZR87_RS16330 0.88 -0.9
17,375 - ABZR87_RS16330 0.88 -0.9
17,479 + +0.7
17,480 - -0.3
17,577 - -0.2
17,639 + ABZR87_RS16335 0.16 -1.1
17,639 + ABZR87_RS16335 0.16 -0.8
17,639 + ABZR87_RS16335 0.16 +0.4
17,766 - ABZR87_RS16335 0.30 -1.1
17,995 + ABZR87_RS16335 0.55 +0.1
17,996 - ABZR87_RS16335 0.55 -1.1
18,019 + ABZR87_RS16335 0.58 +0.3
18,019 + ABZR87_RS16335 0.58 -0.9
18,019 + ABZR87_RS16335 0.58 -1.3
18,019 + ABZR87_RS16335 0.58 +1.7
18,019 + ABZR87_RS16335 0.58 -0.4
18,020 - ABZR87_RS16335 0.58 +0.1
18,020 - ABZR87_RS16335 0.58 -1.8
18,726 + ABZR87_RS16340 0.40 -1.1
18,726 + ABZR87_RS16340 0.40 +0.7
19,073 + ABZR87_RS16340 0.83 +0.5
19,143 + -0.4
19,144 - -0.6

Or see this region's nucleotide sequence