Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16020

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16015 and ABZR87_RS16020 are separated by 52 nucleotidesABZR87_RS16020 and ABZR87_RS16025 are separated by 79 nucleotides ABZR87_RS16015: ABZR87_RS16015 - acyltransferase, at 3,386,148 to 3,387,098 _RS16015 ABZR87_RS16020: ABZR87_RS16020 - tRNA-Ser, at 3,387,151 to 3,387,240 _RS16020 ABZR87_RS16025: ABZR87_RS16025 - serine--tRNA ligase, at 3,387,320 to 3,388,636 _RS16025 Position (kb) 3387 3388Strain fitness (log2 ratio) -1 0 1 2at 3386.272 kb on + strand, within ABZR87_RS16015at 3386.333 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.413 kb on - strand, within ABZR87_RS16015at 3386.413 kb on - strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.521 kb on - strand, within ABZR87_RS16015at 3386.704 kb on - strand, within ABZR87_RS16015at 3386.740 kb on - strand, within ABZR87_RS16015at 3386.822 kb on + strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.943 kb on + strand, within ABZR87_RS16015at 3386.944 kb on - strand, within ABZR87_RS16015at 3387.096 kb on + strandat 3387.097 kb on - strandat 3387.126 kb on - strandat 3387.145 kb on + strandat 3387.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,386,272 + ABZR87_RS16015 0.13 +0.0
3,386,333 + ABZR87_RS16015 0.19 -0.3
3,386,412 + ABZR87_RS16015 0.28 +0.5
3,386,412 + ABZR87_RS16015 0.28 +0.2
3,386,412 + ABZR87_RS16015 0.28 -1.1
3,386,413 - ABZR87_RS16015 0.28 -1.7
3,386,413 - ABZR87_RS16015 0.28 +0.7
3,386,520 + ABZR87_RS16015 0.39 +0.3
3,386,520 + ABZR87_RS16015 0.39 -1.3
3,386,520 + ABZR87_RS16015 0.39 +1.3
3,386,521 - ABZR87_RS16015 0.39 +0.3
3,386,704 - ABZR87_RS16015 0.58 +0.8
3,386,740 - ABZR87_RS16015 0.62 +1.0
3,386,822 + ABZR87_RS16015 0.71 +0.0
3,386,901 - ABZR87_RS16015 0.79 +1.8
3,386,901 - ABZR87_RS16015 0.79 -0.6
3,386,901 - ABZR87_RS16015 0.79 -0.5
3,386,901 - ABZR87_RS16015 0.79 -0.3
3,386,943 + ABZR87_RS16015 0.84 -0.6
3,386,944 - ABZR87_RS16015 0.84 -1.3
3,387,096 + -0.6
3,387,097 - +0.1
3,387,126 - -0.6
3,387,145 + -0.6
3,387,145 + -1.4

Or see this region's nucleotide sequence