Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15410

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15400 and ABZR87_RS15405 are separated by 171 nucleotidesABZR87_RS15405 and ABZR87_RS15410 are separated by 94 nucleotidesABZR87_RS15410 and ABZR87_RS15415 are separated by 156 nucleotides ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361 _RS15400 ABZR87_RS15405: ABZR87_RS15405 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,242,533 to 3,243,258 _RS15405 ABZR87_RS15410: ABZR87_RS15410 - phosphoribosylamine--glycine ligase, at 3,243,353 to 3,244,621 _RS15410 ABZR87_RS15415: ABZR87_RS15415 - oxygen-dependent coproporphyrinogen oxidase, at 3,244,778 to 3,245,686 _RS15415 Position (kb) 3243 3244 3245Strain fitness (log2 ratio) -2 -1 0 1 2at 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.461 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.559 kb on + strandat 3242.568 kb on + strandat 3242.568 kb on + strandat 3242.776 kb on + strand, within ABZR87_RS15405at 3242.776 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3243.256 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.348 kb on - strandat 3243.348 kb on - strandat 3243.437 kb on + strandat 3243.437 kb on + strandat 3243.438 kb on - strandat 3243.747 kb on - strand, within ABZR87_RS15410at 3244.375 kb on + strand, within ABZR87_RS15410at 3244.714 kb on + strandat 3244.714 kb on + strandat 3244.715 kb on - strandat 3244.715 kb on - strandat 3244.731 kb on + strandat 3244.731 kb on + strandat 3244.731 kb on + strandat 3244.731 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
3,242,444 + -0.1
3,242,444 + -0.8
3,242,444 + -0.1
3,242,461 + -0.2
3,242,463 + -0.6
3,242,463 + +0.6
3,242,463 + +0.3
3,242,559 + -0.3
3,242,568 + -1.7
3,242,568 + -1.0
3,242,776 + ABZR87_RS15405 0.33 -1.8
3,242,776 + ABZR87_RS15405 0.33 +0.5
3,242,890 + ABZR87_RS15405 0.49 -1.5
3,242,890 + ABZR87_RS15405 0.49 -1.0
3,242,890 + ABZR87_RS15405 0.49 -0.7
3,242,890 + ABZR87_RS15405 0.49 +0.5
3,243,256 + -1.7
3,243,347 + -0.8
3,243,347 + +2.2
3,243,347 + -0.6
3,243,347 + -1.0
3,243,348 - -0.3
3,243,348 - +1.9
3,243,437 + +0.1
3,243,437 + +0.3
3,243,438 - +0.3
3,243,747 - ABZR87_RS15410 0.31 +0.9
3,244,375 + ABZR87_RS15410 0.81 +1.2
3,244,714 + -1.2
3,244,714 + +1.1
3,244,715 - +0.1
3,244,715 - -0.3
3,244,731 + -0.0
3,244,731 + -0.1
3,244,731 + +0.4
3,244,731 + +0.5

Or see this region's nucleotide sequence