Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12065

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12055 and ABZR87_RS12060 are separated by 3 nucleotidesABZR87_RS12060 and ABZR87_RS12065 are separated by 7 nucleotidesABZR87_RS12065 and ABZR87_RS12070 are separated by 48 nucleotides ABZR87_RS12055: ABZR87_RS12055 - amidohydrolase family protein, at 2,559,603 to 2,560,484 _RS12055 ABZR87_RS12060: ABZR87_RS12060 - SDR family oxidoreductase, at 2,560,488 to 2,561,264 _RS12060 ABZR87_RS12065: ABZR87_RS12065 - L-rhamnose mutarotase, at 2,561,272 to 2,561,616 _RS12065 ABZR87_RS12070: ABZR87_RS12070 - porin, at 2,561,665 to 2,562,720 _RS12070 Position (kb) 2561 2562Strain fitness (log2 ratio) -1 0 1at 2560.461 kb on + strandat 2560.461 kb on + strandat 2560.736 kb on + strand, within ABZR87_RS12060at 2560.736 kb on + strand, within ABZR87_RS12060at 2560.755 kb on - strand, within ABZR87_RS12060at 2560.839 kb on + strand, within ABZR87_RS12060at 2560.839 kb on + strand, within ABZR87_RS12060at 2560.840 kb on - strand, within ABZR87_RS12060at 2560.898 kb on + strand, within ABZR87_RS12060at 2560.934 kb on + strand, within ABZR87_RS12060at 2560.935 kb on - strand, within ABZR87_RS12060at 2560.935 kb on - strand, within ABZR87_RS12060at 2560.944 kb on + strand, within ABZR87_RS12060at 2560.945 kb on - strand, within ABZR87_RS12060at 2561.058 kb on + strand, within ABZR87_RS12060at 2561.058 kb on + strand, within ABZR87_RS12060at 2561.058 kb on + strand, within ABZR87_RS12060at 2561.058 kb on + strand, within ABZR87_RS12060at 2561.059 kb on - strand, within ABZR87_RS12060at 2561.111 kb on + strand, within ABZR87_RS12060at 2561.112 kb on - strand, within ABZR87_RS12060at 2561.112 kb on - strand, within ABZR87_RS12060at 2561.112 kb on - strand, within ABZR87_RS12060at 2561.235 kb on + strandat 2561.235 kb on + strandat 2561.236 kb on - strandat 2561.236 kb on - strandat 2561.326 kb on + strand, within ABZR87_RS12065at 2561.404 kb on + strand, within ABZR87_RS12065at 2561.455 kb on + strand, within ABZR87_RS12065at 2561.456 kb on - strand, within ABZR87_RS12065at 2561.753 kb on - strandat 2562.145 kb on + strand, within ABZR87_RS12070at 2562.361 kb on + strand, within ABZR87_RS12070

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,560,461 + -0.9
2,560,461 + +0.6
2,560,736 + ABZR87_RS12060 0.32 +0.2
2,560,736 + ABZR87_RS12060 0.32 +0.9
2,560,755 - ABZR87_RS12060 0.34 +0.5
2,560,839 + ABZR87_RS12060 0.45 +0.5
2,560,839 + ABZR87_RS12060 0.45 -0.5
2,560,840 - ABZR87_RS12060 0.45 +0.3
2,560,898 + ABZR87_RS12060 0.53 -0.1
2,560,934 + ABZR87_RS12060 0.57 -1.4
2,560,935 - ABZR87_RS12060 0.58 -0.6
2,560,935 - ABZR87_RS12060 0.58 +0.4
2,560,944 + ABZR87_RS12060 0.59 +0.7
2,560,945 - ABZR87_RS12060 0.59 -0.8
2,561,058 + ABZR87_RS12060 0.73 -0.3
2,561,058 + ABZR87_RS12060 0.73 -0.8
2,561,058 + ABZR87_RS12060 0.73 -1.2
2,561,058 + ABZR87_RS12060 0.73 +0.2
2,561,059 - ABZR87_RS12060 0.73 +1.0
2,561,111 + ABZR87_RS12060 0.80 -1.7
2,561,112 - ABZR87_RS12060 0.80 -0.6
2,561,112 - ABZR87_RS12060 0.80 -0.6
2,561,112 - ABZR87_RS12060 0.80 -0.0
2,561,235 + -0.9
2,561,235 + -0.4
2,561,236 - +1.0
2,561,236 - -0.1
2,561,326 + ABZR87_RS12065 0.16 +1.2
2,561,404 + ABZR87_RS12065 0.38 +0.9
2,561,455 + ABZR87_RS12065 0.53 -0.1
2,561,456 - ABZR87_RS12065 0.53 +1.7
2,561,753 - +0.2
2,562,145 + ABZR87_RS12070 0.45 +0.7
2,562,361 + ABZR87_RS12070 0.66 -0.2

Or see this region's nucleotide sequence