Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06195

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06190 and ABZR87_RS06195 are separated by 1 nucleotidesABZR87_RS06195 and ABZR87_RS06200 are separated by 14 nucleotides ABZR87_RS06190: ABZR87_RS06190 - enoyl-CoA hydratase/isomerase family protein, at 1,320,209 to 1,320,982 _RS06190 ABZR87_RS06195: ABZR87_RS06195 - acyclic terpene utilization AtuA family protein, at 1,320,984 to 1,322,756 _RS06195 ABZR87_RS06200: ABZR87_RS06200 - acyl-CoA dehydrogenase family protein, at 1,322,771 to 1,323,925 _RS06200 Position (kb) 1320 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2at 1320.056 kb on + strandat 1320.057 kb on - strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.771 kb on + strand, within ABZR87_RS06190at 1320.771 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.834 kb on - strand, within ABZR87_RS06190at 1321.095 kb on + strandat 1321.096 kb on - strandat 1321.158 kb on + strandat 1321.159 kb on - strandat 1321.431 kb on + strand, within ABZR87_RS06195at 1321.561 kb on - strand, within ABZR87_RS06195at 1321.561 kb on - strand, within ABZR87_RS06195at 1321.777 kb on - strand, within ABZR87_RS06195at 1321.800 kb on + strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.908 kb on + strand, within ABZR87_RS06195at 1321.908 kb on + strand, within ABZR87_RS06195at 1321.909 kb on - strand, within ABZR87_RS06195at 1321.909 kb on - strand, within ABZR87_RS06195at 1321.926 kb on + strand, within ABZR87_RS06195at 1321.926 kb on + strand, within ABZR87_RS06195at 1321.927 kb on - strand, within ABZR87_RS06195at 1321.927 kb on - strand, within ABZR87_RS06195at 1322.059 kb on - strand, within ABZR87_RS06195at 1322.094 kb on + strand, within ABZR87_RS06195at 1322.094 kb on + strand, within ABZR87_RS06195at 1322.095 kb on - strand, within ABZR87_RS06195at 1322.095 kb on - strand, within ABZR87_RS06195at 1322.095 kb on - strand, within ABZR87_RS06195at 1322.095 kb on - strand, within ABZR87_RS06195at 1322.096 kb on - strand, within ABZR87_RS06195at 1322.280 kb on + strand, within ABZR87_RS06195at 1322.280 kb on + strand, within ABZR87_RS06195at 1322.280 kb on + strand, within ABZR87_RS06195at 1322.457 kb on + strand, within ABZR87_RS06195at 1322.605 kb on - strandat 1322.818 kb on + strandat 1322.963 kb on + strand, within ABZR87_RS06200at 1322.963 kb on + strand, within ABZR87_RS06200at 1322.964 kb on - strand, within ABZR87_RS06200at 1323.230 kb on + strand, within ABZR87_RS06200at 1323.230 kb on + strand, within ABZR87_RS06200at 1323.230 kb on + strand, within ABZR87_RS06200at 1323.230 kb on + strand, within ABZR87_RS06200at 1323.230 kb on + strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.231 kb on - strand, within ABZR87_RS06200at 1323.282 kb on - strand, within ABZR87_RS06200at 1323.282 kb on - strand, within ABZR87_RS06200at 1323.353 kb on - strand, within ABZR87_RS06200at 1323.533 kb on + strand, within ABZR87_RS06200at 1323.533 kb on + strand, within ABZR87_RS06200at 1323.534 kb on - strand, within ABZR87_RS06200at 1323.534 kb on - strand, within ABZR87_RS06200

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,320,056 + -1.6
1,320,057 - +1.4
1,320,058 + +1.4
1,320,058 + -1.1
1,320,058 + -0.8
1,320,058 + +0.5
1,320,058 + -2.1
1,320,058 + +0.3
1,320,058 + -0.6
1,320,058 + +0.0
1,320,059 - -0.4
1,320,059 - -1.3
1,320,059 - -0.7
1,320,771 + ABZR87_RS06190 0.73 +1.2
1,320,771 + ABZR87_RS06190 0.73 +1.2
1,320,833 + ABZR87_RS06190 0.81 -1.2
1,320,833 + ABZR87_RS06190 0.81 -0.4
1,320,833 + ABZR87_RS06190 0.81 -0.0
1,320,833 + ABZR87_RS06190 0.81 -0.2
1,320,834 - ABZR87_RS06190 0.81 +0.3
1,321,095 + -0.1
1,321,096 - +0.4
1,321,158 + +1.9
1,321,159 - -1.5
1,321,431 + ABZR87_RS06195 0.25 +0.5
1,321,561 - ABZR87_RS06195 0.33 -1.3
1,321,561 - ABZR87_RS06195 0.33 +0.9
1,321,777 - ABZR87_RS06195 0.45 -0.1
1,321,800 + ABZR87_RS06195 0.46 +0.4
1,321,801 - ABZR87_RS06195 0.46 +0.3
1,321,801 - ABZR87_RS06195 0.46 -1.0
1,321,801 - ABZR87_RS06195 0.46 -0.0
1,321,908 + ABZR87_RS06195 0.52 +0.1
1,321,908 + ABZR87_RS06195 0.52 +1.4
1,321,909 - ABZR87_RS06195 0.52 +0.1
1,321,909 - ABZR87_RS06195 0.52 +0.2
1,321,926 + ABZR87_RS06195 0.53 -0.2
1,321,926 + ABZR87_RS06195 0.53 +0.1
1,321,927 - ABZR87_RS06195 0.53 +1.4
1,321,927 - ABZR87_RS06195 0.53 -0.1
1,322,059 - ABZR87_RS06195 0.61 -0.4
1,322,094 + ABZR87_RS06195 0.63 -0.4
1,322,094 + ABZR87_RS06195 0.63 -0.6
1,322,095 - ABZR87_RS06195 0.63 -0.9
1,322,095 - ABZR87_RS06195 0.63 +0.8
1,322,095 - ABZR87_RS06195 0.63 +0.6
1,322,095 - ABZR87_RS06195 0.63 +1.0
1,322,096 - ABZR87_RS06195 0.63 -0.4
1,322,280 + ABZR87_RS06195 0.73 -0.2
1,322,280 + ABZR87_RS06195 0.73 +1.3
1,322,280 + ABZR87_RS06195 0.73 +0.1
1,322,457 + ABZR87_RS06195 0.83 +0.5
1,322,605 - -0.1
1,322,818 + +0.3
1,322,963 + ABZR87_RS06200 0.17 +0.5
1,322,963 + ABZR87_RS06200 0.17 +0.8
1,322,964 - ABZR87_RS06200 0.17 -1.7
1,323,230 + ABZR87_RS06200 0.40 -1.5
1,323,230 + ABZR87_RS06200 0.40 +0.1
1,323,230 + ABZR87_RS06200 0.40 +0.6
1,323,230 + ABZR87_RS06200 0.40 -0.2
1,323,230 + ABZR87_RS06200 0.40 +0.6
1,323,231 - ABZR87_RS06200 0.40 +0.3
1,323,231 - ABZR87_RS06200 0.40 +1.2
1,323,231 - ABZR87_RS06200 0.40 +0.5
1,323,231 - ABZR87_RS06200 0.40 +0.7
1,323,231 - ABZR87_RS06200 0.40 -0.2
1,323,231 - ABZR87_RS06200 0.40 -0.6
1,323,282 - ABZR87_RS06200 0.44 +0.7
1,323,282 - ABZR87_RS06200 0.44 -0.2
1,323,353 - ABZR87_RS06200 0.50 +0.4
1,323,533 + ABZR87_RS06200 0.66 -0.2
1,323,533 + ABZR87_RS06200 0.66 -1.3
1,323,534 - ABZR87_RS06200 0.66 -1.4
1,323,534 - ABZR87_RS06200 0.66 -0.6

Or see this region's nucleotide sequence