Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04050

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04045 and ABZR87_RS04050 are separated by 115 nucleotidesABZR87_RS04050 and ABZR87_RS04055 are separated by 20 nucleotides ABZR87_RS04045: ABZR87_RS04045 - alpha/beta hydrolase, at 848,036 to 848,983 _RS04045 ABZR87_RS04050: ABZR87_RS04050 - CoA-binding protein, at 849,099 to 849,560 _RS04050 ABZR87_RS04055: ABZR87_RS04055 - RsiV family protein, at 849,581 to 850,723 _RS04055 Position (kb) 849 850Strain fitness (log2 ratio) -2 -1 0 1 2 3at 848.116 kb on + strandat 848.117 kb on - strandat 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.193 kb on + strand, within ABZR87_RS04045at 848.193 kb on + strand, within ABZR87_RS04045at 848.194 kb on - strand, within ABZR87_RS04045at 848.257 kb on + strand, within ABZR87_RS04045at 848.258 kb on - strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.350 kb on - strand, within ABZR87_RS04045at 848.350 kb on - strand, within ABZR87_RS04045at 848.400 kb on + strand, within ABZR87_RS04045at 848.401 kb on - strand, within ABZR87_RS04045at 848.401 kb on - strand, within ABZR87_RS04045at 848.437 kb on - strand, within ABZR87_RS04045at 848.574 kb on + strand, within ABZR87_RS04045at 848.575 kb on - strand, within ABZR87_RS04045at 848.575 kb on - strand, within ABZR87_RS04045at 848.665 kb on + strand, within ABZR87_RS04045at 848.666 kb on - strand, within ABZR87_RS04045at 848.952 kb on + strandat 848.952 kb on + strandat 848.952 kb on + strandat 848.953 kb on - strandat 848.953 kb on - strandat 848.953 kb on - strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.989 kb on - strandat 848.989 kb on - strandat 848.989 kb on - strandat 848.989 kb on - strandat 849.016 kb on + strandat 849.016 kb on + strandat 849.017 kb on - strandat 849.046 kb on + strandat 849.047 kb on - strandat 849.047 kb on - strandat 849.100 kb on + strandat 849.100 kb on + strandat 849.100 kb on + strandat 849.293 kb on + strand, within ABZR87_RS04050at 849.358 kb on + strand, within ABZR87_RS04050at 849.358 kb on + strand, within ABZR87_RS04050at 849.358 kb on + strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.359 kb on - strand, within ABZR87_RS04050at 849.436 kb on + strand, within ABZR87_RS04050at 849.436 kb on + strand, within ABZR87_RS04050at 849.437 kb on - strand, within ABZR87_RS04050at 849.451 kb on + strand, within ABZR87_RS04050at 849.451 kb on + strand, within ABZR87_RS04050at 849.451 kb on + strand, within ABZR87_RS04050at 849.451 kb on + strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.452 kb on - strand, within ABZR87_RS04050at 849.541 kb on + strandat 849.541 kb on + strandat 849.541 kb on + strandat 849.541 kb on + strandat 849.541 kb on + strandat 849.542 kb on - strandat 849.654 kb on + strandat 849.654 kb on + strandat 849.655 kb on - strandat 849.669 kb on + strandat 849.669 kb on + strandat 849.669 kb on + strandat 849.669 kb on + strandat 849.670 kb on - strandat 849.709 kb on + strand, within ABZR87_RS04055at 849.727 kb on + strand, within ABZR87_RS04055at 849.805 kb on + strand, within ABZR87_RS04055at 849.805 kb on + strand, within ABZR87_RS04055at 849.805 kb on + strand, within ABZR87_RS04055at 849.805 kb on + strand, within ABZR87_RS04055at 849.806 kb on - strand, within ABZR87_RS04055at 849.806 kb on - strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.909 kb on + strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.910 kb on - strand, within ABZR87_RS04055at 849.933 kb on + strand, within ABZR87_RS04055at 849.933 kb on + strand, within ABZR87_RS04055at 849.933 kb on + strand, within ABZR87_RS04055at 849.933 kb on + strand, within ABZR87_RS04055at 849.934 kb on - strand, within ABZR87_RS04055at 850.128 kb on + strand, within ABZR87_RS04055at 850.129 kb on - strand, within ABZR87_RS04055at 850.129 kb on - strand, within ABZR87_RS04055at 850.359 kb on + strand, within ABZR87_RS04055at 850.359 kb on + strand, within ABZR87_RS04055at 850.359 kb on + strand, within ABZR87_RS04055at 850.359 kb on + strand, within ABZR87_RS04055at 850.359 kb on + strand, within ABZR87_RS04055at 850.360 kb on - strand, within ABZR87_RS04055at 850.428 kb on + strand, within ABZR87_RS04055at 850.429 kb on - strand, within ABZR87_RS04055at 850.429 kb on - strand, within ABZR87_RS04055at 850.475 kb on + strand, within ABZR87_RS04055at 850.476 kb on - strand, within ABZR87_RS04055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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848,116 + -0.5
848,117 - -0.5
848,185 - ABZR87_RS04045 0.16 +3.0
848,185 - ABZR87_RS04045 0.16 -0.8
848,185 - ABZR87_RS04045 0.16 +0.8
848,185 - ABZR87_RS04045 0.16 -2.3
848,193 + ABZR87_RS04045 0.17 -1.3
848,193 + ABZR87_RS04045 0.17 +0.1
848,194 - ABZR87_RS04045 0.17 -0.7
848,257 + ABZR87_RS04045 0.23 +1.1
848,258 - ABZR87_RS04045 0.23 +2.3
848,259 + ABZR87_RS04045 0.24 +0.3
848,259 + ABZR87_RS04045 0.24 -0.4
848,259 + ABZR87_RS04045 0.24 -1.2
848,260 - ABZR87_RS04045 0.24 +0.8
848,260 - ABZR87_RS04045 0.24 -1.0
848,260 - ABZR87_RS04045 0.24 -0.6
848,260 - ABZR87_RS04045 0.24 +0.5
848,260 - ABZR87_RS04045 0.24 -0.8
848,337 + ABZR87_RS04045 0.32 -0.4
848,337 + ABZR87_RS04045 0.32 -0.2
848,337 + ABZR87_RS04045 0.32 -0.9
848,338 - ABZR87_RS04045 0.32 -1.4
848,338 - ABZR87_RS04045 0.32 -0.8
848,338 - ABZR87_RS04045 0.32 -2.6
848,338 - ABZR87_RS04045 0.32 -0.3
848,338 - ABZR87_RS04045 0.32 -0.1
848,338 - ABZR87_RS04045 0.32 +0.0
848,338 - ABZR87_RS04045 0.32 +0.0
848,349 + ABZR87_RS04045 0.33 -0.7
848,349 + ABZR87_RS04045 0.33 -1.0
848,349 + ABZR87_RS04045 0.33 +0.1
848,349 + ABZR87_RS04045 0.33 +0.9
848,350 - ABZR87_RS04045 0.33 +0.1
848,350 - ABZR87_RS04045 0.33 -0.5
848,400 + ABZR87_RS04045 0.38 +0.4
848,401 - ABZR87_RS04045 0.39 +0.4
848,401 - ABZR87_RS04045 0.39 +0.7
848,437 - ABZR87_RS04045 0.42 -0.9
848,574 + ABZR87_RS04045 0.57 +1.3
848,575 - ABZR87_RS04045 0.57 +0.7
848,575 - ABZR87_RS04045 0.57 +0.9
848,665 + ABZR87_RS04045 0.66 +1.3
848,666 - ABZR87_RS04045 0.66 +0.4
848,952 + +0.3
848,952 + +0.3
848,952 + -0.0
848,953 - -0.1
848,953 - +0.6
848,953 - +1.1
848,988 + -0.1
848,988 + -0.5
848,988 + -0.9
848,988 + +0.2
848,988 + -0.7
848,989 - +2.8
848,989 - +1.2
848,989 - -0.3
848,989 - -0.3
849,016 + -0.3
849,016 + -1.2
849,017 - +0.1
849,046 + -0.0
849,047 - -0.2
849,047 - +0.4
849,100 + +0.4
849,100 + +2.0
849,100 + -0.6
849,293 + ABZR87_RS04050 0.42 +1.2
849,358 + ABZR87_RS04050 0.56 -0.6
849,358 + ABZR87_RS04050 0.56 +0.5
849,358 + ABZR87_RS04050 0.56 +0.6
849,359 - ABZR87_RS04050 0.56 +0.1
849,359 - ABZR87_RS04050 0.56 +0.9
849,359 - ABZR87_RS04050 0.56 +0.5
849,359 - ABZR87_RS04050 0.56 +0.3
849,359 - ABZR87_RS04050 0.56 -0.8
849,359 - ABZR87_RS04050 0.56 +0.0
849,359 - ABZR87_RS04050 0.56 +0.6
849,436 + ABZR87_RS04050 0.73 +0.3
849,436 + ABZR87_RS04050 0.73 +1.7
849,437 - ABZR87_RS04050 0.73 -0.6
849,451 + ABZR87_RS04050 0.76 -0.8
849,451 + ABZR87_RS04050 0.76 +0.1
849,451 + ABZR87_RS04050 0.76 +0.3
849,451 + ABZR87_RS04050 0.76 -0.3
849,452 - ABZR87_RS04050 0.76 +0.5
849,452 - ABZR87_RS04050 0.76 +2.1
849,452 - ABZR87_RS04050 0.76 -0.8
849,452 - ABZR87_RS04050 0.76 -0.7
849,452 - ABZR87_RS04050 0.76 +0.6
849,452 - ABZR87_RS04050 0.76 +0.1
849,452 - ABZR87_RS04050 0.76 +0.2
849,541 + -0.1
849,541 + +0.3
849,541 + -0.3
849,541 + -0.2
849,541 + +0.6
849,542 - -2.1
849,654 + -0.7
849,654 + +0.7
849,655 - -0.6
849,669 + -0.4
849,669 + -0.4
849,669 + -0.2
849,669 + +0.1
849,670 - +0.8
849,709 + ABZR87_RS04055 0.11 +0.8
849,727 + ABZR87_RS04055 0.13 +1.8
849,805 + ABZR87_RS04055 0.20 +0.3
849,805 + ABZR87_RS04055 0.20 +0.5
849,805 + ABZR87_RS04055 0.20 -2.4
849,805 + ABZR87_RS04055 0.20 -0.9
849,806 - ABZR87_RS04055 0.20 -0.5
849,806 - ABZR87_RS04055 0.20 +0.2
849,909 + ABZR87_RS04055 0.29 -0.7
849,909 + ABZR87_RS04055 0.29 +0.6
849,909 + ABZR87_RS04055 0.29 -1.0
849,909 + ABZR87_RS04055 0.29 -1.3
849,909 + ABZR87_RS04055 0.29 -0.1
849,909 + ABZR87_RS04055 0.29 -0.5
849,909 + ABZR87_RS04055 0.29 +0.4
849,909 + ABZR87_RS04055 0.29 +0.2
849,909 + ABZR87_RS04055 0.29 +0.9
849,910 - ABZR87_RS04055 0.29 -0.9
849,910 - ABZR87_RS04055 0.29 -1.0
849,910 - ABZR87_RS04055 0.29 -0.1
849,910 - ABZR87_RS04055 0.29 -1.3
849,910 - ABZR87_RS04055 0.29 -0.7
849,910 - ABZR87_RS04055 0.29 +0.5
849,933 + ABZR87_RS04055 0.31 -0.1
849,933 + ABZR87_RS04055 0.31 +0.8
849,933 + ABZR87_RS04055 0.31 +0.5
849,933 + ABZR87_RS04055 0.31 +0.1
849,934 - ABZR87_RS04055 0.31 -0.6
850,128 + ABZR87_RS04055 0.48 +0.3
850,129 - ABZR87_RS04055 0.48 +0.4
850,129 - ABZR87_RS04055 0.48 -0.8
850,359 + ABZR87_RS04055 0.68 +0.4
850,359 + ABZR87_RS04055 0.68 +0.6
850,359 + ABZR87_RS04055 0.68 -1.5
850,359 + ABZR87_RS04055 0.68 +1.5
850,359 + ABZR87_RS04055 0.68 +0.8
850,360 - ABZR87_RS04055 0.68 -0.6
850,428 + ABZR87_RS04055 0.74 +0.6
850,429 - ABZR87_RS04055 0.74 +0.8
850,429 - ABZR87_RS04055 0.74 +0.5
850,475 + ABZR87_RS04055 0.78 -1.4
850,476 - ABZR87_RS04055 0.78 +0.7

Or see this region's nucleotide sequence