Strain Fitness in Sinorhizobium meliloti 1021 around SMc04194

Experiment: LB, pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc04194 and SMc04195 are separated by 379 nucleotides SMc04194: SMc04194 - transmembrane protein, at 2,181,031 to 2,181,228 SMc04194 SMc04195: SMc04195 - transposase ISRM3, at 2,181,608 to 2,182,810 SMc04195 Position (kb) 2181 2182Strain fitness (log2 ratio) -2 -1 0 1at 2180.232 kb on + strandat 2180.460 kb on + strandat 2180.461 kb on - strandat 2180.637 kb on - strandat 2180.656 kb on + strandat 2180.656 kb on + strandat 2180.656 kb on + strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.657 kb on - strandat 2180.737 kb on - strandat 2180.744 kb on + strandat 2180.744 kb on + strandat 2180.749 kb on + strandat 2180.751 kb on + strandat 2180.764 kb on + strandat 2180.764 kb on + strandat 2180.765 kb on - strandat 2180.818 kb on - strandat 2180.818 kb on - strandat 2180.818 kb on - strandat 2180.818 kb on - strandat 2180.819 kb on + strandat 2180.819 kb on + strandat 2180.819 kb on + strandat 2180.820 kb on - strandat 2180.822 kb on - strandat 2180.822 kb on - strandat 2180.835 kb on + strandat 2181.049 kb on + strandat 2181.049 kb on + strandat 2181.050 kb on - strandat 2181.050 kb on - strandat 2181.066 kb on + strand, within SMc04194at 2181.084 kb on - strand, within SMc04194at 2181.084 kb on - strand, within SMc04194at 2181.084 kb on - strand, within SMc04194at 2181.084 kb on - strand, within SMc04194at 2181.084 kb on - strand, within SMc04194at 2181.140 kb on + strand, within SMc04194at 2181.140 kb on + strand, within SMc04194at 2181.270 kb on - strandat 2181.320 kb on + strandat 2181.321 kb on - strandat 2181.381 kb on + strandat 2181.403 kb on - strandat 2181.448 kb on + strandat 2181.448 kb on + strandat 2181.464 kb on - strandat 2181.514 kb on + strandat 2181.515 kb on - strandat 2181.515 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
remove
2,180,232 + -0.5
2,180,460 + +0.1
2,180,461 - -0.3
2,180,637 - -0.0
2,180,656 + -0.8
2,180,656 + -0.3
2,180,656 + -0.1
2,180,657 - -0.4
2,180,657 - +0.6
2,180,657 - -0.2
2,180,657 - -0.4
2,180,657 - +1.2
2,180,657 - +0.9
2,180,657 - +0.5
2,180,737 - +0.3
2,180,744 + +0.0
2,180,744 + +1.6
2,180,749 + +1.2
2,180,751 + +0.1
2,180,764 + -0.0
2,180,764 + +0.5
2,180,765 - +0.2
2,180,818 - +0.5
2,180,818 - -0.2
2,180,818 - +0.8
2,180,818 - -0.9
2,180,819 + +0.3
2,180,819 + +1.3
2,180,819 + -0.8
2,180,820 - +0.4
2,180,822 - +0.0
2,180,822 - -2.3
2,180,835 + +1.6
2,181,049 + +0.1
2,181,049 + +0.4
2,181,050 - -2.0
2,181,050 - -0.2
2,181,066 + SMc04194 0.18 +0.4
2,181,084 - SMc04194 0.27 -0.0
2,181,084 - SMc04194 0.27 +0.0
2,181,084 - SMc04194 0.27 +0.7
2,181,084 - SMc04194 0.27 +0.8
2,181,084 - SMc04194 0.27 -0.1
2,181,140 + SMc04194 0.55 +0.6
2,181,140 + SMc04194 0.55 +0.2
2,181,270 - -0.2
2,181,320 + -2.0
2,181,321 - -0.6
2,181,381 + -0.3
2,181,403 - +0.6
2,181,448 + +0.3
2,181,448 + +0.3
2,181,464 - -0.5
2,181,514 + +0.1
2,181,515 - +0.3
2,181,515 - -1.2

Or see this region's nucleotide sequence