Strain Fitness in Sinorhizobium meliloti 1021 around SMc04091

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04090 and SMc04091 overlap by 1 nucleotidesSMc04091 and SMc04092 are separated by 130 nucleotidesSMc04092 and SMc04093 are separated by 244 nucleotides SMc04090: SMc04090 - sun protein, at 3,631,752 to 3,633,164 SMc04090 SMc04091: SMc04091 - heat shock protein HtpX, at 3,633,164 to 3,634,123 SMc04091 SMc04092: SMc04092 - hypothetical protein, at 3,634,254 to 3,634,508 SMc04092 SMc04093: SMc04093 - acetyl-CoA synthetase, at 3,634,753 to 3,636,702 SMc04093 Position (kb) 3633 3634 3635Strain fitness (log2 ratio) -2 -1 0 1 2at 3632.547 kb on + strand, within SMc04090at 3632.590 kb on + strand, within SMc04090at 3632.882 kb on + strand, within SMc04090at 3632.957 kb on - strand, within SMc04090at 3633.150 kb on - strandat 3633.247 kb on + strandat 3633.388 kb on + strand, within SMc04091at 3633.388 kb on + strand, within SMc04091at 3633.388 kb on + strand, within SMc04091at 3633.389 kb on - strand, within SMc04091at 3633.492 kb on - strand, within SMc04091at 3633.492 kb on - strand, within SMc04091at 3633.520 kb on - strand, within SMc04091at 3633.529 kb on + strand, within SMc04091at 3633.529 kb on + strand, within SMc04091at 3633.530 kb on - strand, within SMc04091at 3633.549 kb on - strand, within SMc04091at 3633.762 kb on + strand, within SMc04091at 3633.916 kb on - strand, within SMc04091at 3633.919 kb on - strand, within SMc04091at 3634.059 kb on + strandat 3634.060 kb on - strandat 3634.060 kb on - strandat 3634.251 kb on + strandat 3634.251 kb on + strandat 3634.251 kb on + strandat 3634.251 kb on + strandat 3634.252 kb on - strandat 3634.252 kb on - strandat 3634.253 kb on + strandat 3634.253 kb on + strandat 3634.253 kb on + strandat 3634.264 kb on + strandat 3634.284 kb on - strand, within SMc04092at 3634.421 kb on + strand, within SMc04092at 3634.422 kb on - strand, within SMc04092at 3634.593 kb on + strandat 3634.593 kb on + strandat 3634.594 kb on - strandat 3634.642 kb on + strandat 3634.643 kb on - strandat 3634.740 kb on - strandat 3635.024 kb on + strand, within SMc04093at 3635.024 kb on + strand, within SMc04093at 3635.024 kb on + strand, within SMc04093at 3635.025 kb on - strand, within SMc04093

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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3,632,547 + SMc04090 0.56 -0.2
3,632,590 + SMc04090 0.59 +0.3
3,632,882 + SMc04090 0.80 -0.1
3,632,957 - SMc04090 0.85 -1.5
3,633,150 - +0.2
3,633,247 + -1.8
3,633,388 + SMc04091 0.23 +0.2
3,633,388 + SMc04091 0.23 -0.4
3,633,388 + SMc04091 0.23 +0.0
3,633,389 - SMc04091 0.23 -1.1
3,633,492 - SMc04091 0.34 +0.2
3,633,492 - SMc04091 0.34 -1.6
3,633,520 - SMc04091 0.37 -1.0
3,633,529 + SMc04091 0.38 -0.7
3,633,529 + SMc04091 0.38 -0.7
3,633,530 - SMc04091 0.38 -0.4
3,633,549 - SMc04091 0.40 -2.0
3,633,762 + SMc04091 0.62 -1.9
3,633,916 - SMc04091 0.78 -2.2
3,633,919 - SMc04091 0.79 -0.7
3,634,059 + +0.2
3,634,060 - -0.8
3,634,060 - -1.8
3,634,251 + -1.4
3,634,251 + -0.7
3,634,251 + -0.9
3,634,251 + +0.7
3,634,252 - +1.0
3,634,252 - -0.1
3,634,253 + -1.2
3,634,253 + -1.8
3,634,253 + -0.4
3,634,264 + -1.3
3,634,284 - SMc04092 0.12 +2.6
3,634,421 + SMc04092 0.65 -0.2
3,634,422 - SMc04092 0.66 +0.6
3,634,593 + -0.0
3,634,593 + +0.1
3,634,594 - -1.3
3,634,642 + +0.1
3,634,643 - +1.5
3,634,740 - -0.9
3,635,024 + SMc04093 0.14 -0.0
3,635,024 + SMc04093 0.14 +0.6
3,635,024 + SMc04093 0.14 -0.0
3,635,025 - SMc04093 0.14 +0.5

Or see this region's nucleotide sequence