Strain Fitness in Sinorhizobium meliloti 1021 around SMc03889

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03888 and SMc03889 are separated by 169 nucleotidesSMc03889 and SMc03890 are separated by 118 nucleotides SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270 SMc03888 SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579 SMc03889 SMc03890: SMc03890 - transcriptional regulator, at 3,557,698 to 3,558,480 SMc03890 Position (kb) 3556 3557 3558Strain fitness (log2 ratio) -1 0 1at 3556.589 kb on - strand, within SMc03889at 3556.640 kb on + strand, within SMc03889at 3557.179 kb on + strand, within SMc03889at 3557.180 kb on - strand, within SMc03889at 3557.580 kb on - strandat 3557.580 kb on - strandat 3557.580 kb on - strandat 3557.580 kb on - strandat 3557.581 kb on + strandat 3557.581 kb on + strandat 3557.706 kb on + strandat 3557.820 kb on + strand, within SMc03890at 3557.903 kb on + strand, within SMc03890at 3558.109 kb on - strand, within SMc03890at 3558.205 kb on + strand, within SMc03890at 3558.205 kb on + strand, within SMc03890at 3558.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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3,556,589 - SMc03889 0.13 -0.9
3,556,640 + SMc03889 0.18 -0.5
3,557,179 + SMc03889 0.65 -1.3
3,557,180 - SMc03889 0.65 -0.5
3,557,580 - -0.5
3,557,580 - +0.6
3,557,580 - -0.3
3,557,580 - -0.8
3,557,581 + +0.1
3,557,581 + -0.6
3,557,706 + -0.7
3,557,820 + SMc03890 0.16 +0.6
3,557,903 + SMc03890 0.26 -0.6
3,558,109 - SMc03890 0.52 -0.2
3,558,205 + SMc03890 0.65 -0.8
3,558,205 + SMc03890 0.65 -0.1
3,558,526 - -1.0

Or see this region's nucleotide sequence