Strain Fitness in Sinorhizobium meliloti 1021 around SMc03182

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03181 and SMc03182 are separated by 2 nucleotidesSMc03182 and SMc03183 overlap by 4 nucleotidesSMc03183 and SMc03184 overlap by 4 nucleotidesSMc03184 and SMc03185 are separated by 0 nucleotides SMc03181: SMc03181 - monovalent cation/H+ antiporter subunit D, at 3,147,068 to 3,148,687 SMc03181 SMc03182: SMc03182 - pH adaptation potassium efflux system E transmembrane protein, at 3,148,690 to 3,149,175 SMc03182 SMc03183: SMc03183 - monovalent cation/H+ antiporter subunit F, at 3,149,172 to 3,149,453 SMc03183 SMc03184: SMc03184 - PH adaptation potassium efflux system G transmembrane protein, at 3,149,450 to 3,149,815 SMc03184 SMc03185: SMc03185 - NADPH dehydrogenase quinone reductase transmembrane protein, at 3,149,816 to 3,150,628 SMc03185 Position (kb) 3148 3149 3150Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3147.794 kb on + strand, within SMc03181at 3147.854 kb on + strand, within SMc03181at 3147.854 kb on + strand, within SMc03181at 3147.854 kb on + strand, within SMc03181at 3147.855 kb on - strand, within SMc03181at 3147.975 kb on + strand, within SMc03181at 3148.023 kb on + strand, within SMc03181at 3148.091 kb on + strand, within SMc03181at 3148.199 kb on + strand, within SMc03181at 3148.415 kb on + strand, within SMc03181at 3148.415 kb on + strand, within SMc03181at 3148.415 kb on + strand, within SMc03181at 3148.416 kb on - strand, within SMc03181at 3148.686 kb on - strandat 3148.776 kb on + strand, within SMc03182at 3148.777 kb on - strand, within SMc03182at 3148.777 kb on - strand, within SMc03182at 3149.062 kb on + strand, within SMc03182at 3149.062 kb on + strand, within SMc03182at 3149.063 kb on - strand, within SMc03182at 3149.165 kb on + strandat 3149.166 kb on - strandat 3149.248 kb on - strand, within SMc03183at 3149.304 kb on + strand, within SMc03183at 3149.304 kb on + strand, within SMc03183at 3149.305 kb on - strand, within SMc03183at 3149.361 kb on + strand, within SMc03183at 3149.361 kb on + strand, within SMc03183at 3149.667 kb on + strand, within SMc03184at 3149.748 kb on - strand, within SMc03184at 3149.813 kb on + strandat 3149.813 kb on + strandat 3149.813 kb on + strandat 3149.814 kb on - strandat 3149.814 kb on - strandat 3149.817 kb on + strandat 3149.818 kb on - strandat 3149.818 kb on - strandat 3149.818 kb on - strandat 3149.925 kb on + strand, within SMc03185at 3149.926 kb on - strand, within SMc03185at 3149.926 kb on - strand, within SMc03185at 3150.045 kb on + strand, within SMc03185at 3150.084 kb on + strand, within SMc03185at 3150.084 kb on + strand, within SMc03185at 3150.151 kb on - strand, within SMc03185at 3150.151 kb on - strand, within SMc03185

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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3,147,794 + SMc03181 0.45 -2.9
3,147,854 + SMc03181 0.49 -3.1
3,147,854 + SMc03181 0.49 -0.7
3,147,854 + SMc03181 0.49 -3.9
3,147,855 - SMc03181 0.49 -2.5
3,147,975 + SMc03181 0.56 -2.7
3,148,023 + SMc03181 0.59 -2.3
3,148,091 + SMc03181 0.63 -0.5
3,148,199 + SMc03181 0.70 -0.1
3,148,415 + SMc03181 0.83 +0.2
3,148,415 + SMc03181 0.83 -1.4
3,148,415 + SMc03181 0.83 -1.8
3,148,416 - SMc03181 0.83 -3.4
3,148,686 - -1.4
3,148,776 + SMc03182 0.18 -2.2
3,148,777 - SMc03182 0.18 -2.3
3,148,777 - SMc03182 0.18 -1.9
3,149,062 + SMc03182 0.77 -3.0
3,149,062 + SMc03182 0.77 -2.1
3,149,063 - SMc03182 0.77 -0.7
3,149,165 + -1.0
3,149,166 - -2.7
3,149,248 - SMc03183 0.27 -2.8
3,149,304 + SMc03183 0.47 -0.5
3,149,304 + SMc03183 0.47 -1.3
3,149,305 - SMc03183 0.47 -2.0
3,149,361 + SMc03183 0.67 -3.0
3,149,361 + SMc03183 0.67 -2.1
3,149,667 + SMc03184 0.59 -2.4
3,149,748 - SMc03184 0.81 -2.3
3,149,813 + +0.1
3,149,813 + +0.9
3,149,813 + +0.8
3,149,814 - -0.5
3,149,814 - -0.3
3,149,817 + +0.6
3,149,818 - +2.0
3,149,818 - -0.8
3,149,818 - -0.3
3,149,925 + SMc03185 0.13 +1.0
3,149,926 - SMc03185 0.14 +0.1
3,149,926 - SMc03185 0.14 -0.3
3,150,045 + SMc03185 0.28 +0.2
3,150,084 + SMc03185 0.33 +0.5
3,150,084 + SMc03185 0.33 +0.2
3,150,151 - SMc03185 0.41 +1.6
3,150,151 - SMc03185 0.41 -0.2

Or see this region's nucleotide sequence