Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03020 and SMc03021 are separated by 19 nucleotides SMc03021 and SMc03022 are separated by 1 nucleotides SMc03022 and SMc03023 are separated by 198 nucleotides SMc03023 and SMc03024 are separated by 1 nucleotides
SMc03020: SMc03020 - flagellar motor switch protein, at 718,449 to 719,081
SMc03020
SMc03021: SMc03021 - flagellar motor switch transmembrane protein, at 719,101 to 720,048
SMc03021
SMc03022: SMc03022 - flagellar motor protein MotA, at 720,050 to 720,928
SMc03022
SMc03023: SMc03023 - hypothetical protein, at 721,127 to 721,906
SMc03023
SMc03024: SMc03024 - flagellar basal body rod protein FlgF, at 721,908 to 722,633
SMc03024
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.165 kb on + strand at 719.166 kb on - strand at 719.198 kb on + strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.639 kb on - strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.696 kb on - strand, within SMc03021 at 719.867 kb on + strand, within SMc03021 at 720.186 kb on + strand, within SMc03022 at 720.186 kb on + strand, within SMc03022 at 720.187 kb on - strand, within SMc03022 at 720.216 kb on + strand, within SMc03022 at 720.216 kb on + strand, within SMc03022 at 720.216 kb on + strand at 720.216 kb on + strand, within SMc03022 at 720.444 kb on + strand, within SMc03022 at 720.444 kb on + strand, within SMc03022 at 720.445 kb on - strand, within SMc03022 at 720.543 kb on + strand, within SMc03022 at 720.544 kb on - strand, within SMc03022 at 720.544 kb on - strand, within SMc03022 at 720.681 kb on + strand, within SMc03022 at 720.682 kb on - strand, within SMc03022 at 720.876 kb on + strand at 720.876 kb on + strand at 720.877 kb on - strand at 720.889 kb on + strand at 720.934 kb on + strand at 720.968 kb on + strand at 720.968 kb on + strand at 721.140 kb on - strand at 721.140 kb on - strand at 721.140 kb on - strand at 721.140 kb on - strand at 721.140 kb on - strand at 721.142 kb on - strand at 721.226 kb on + strand, within SMc03023 at 721.226 kb on + strand, within SMc03023 at 721.226 kb on + strand, within SMc03023 at 721.226 kb on + strand, within SMc03023 at 721.227 kb on - strand, within SMc03023 at 721.227 kb on - strand, within SMc03023 at 721.227 kb on - strand, within SMc03023 at 721.230 kb on - strand, within SMc03023 at 721.230 kb on - strand, within SMc03023 at 721.290 kb on - strand, within SMc03023 at 721.295 kb on + strand, within SMc03023 at 721.296 kb on - strand, within SMc03023 at 721.296 kb on - strand, within SMc03023 at 721.332 kb on - strand, within SMc03023 at 721.332 kb on - strand, within SMc03023 at 721.415 kb on + strand, within SMc03023 at 721.508 kb on - strand, within SMc03023 at 721.568 kb on + strand, within SMc03023 at 721.569 kb on - strand, within SMc03023 at 721.604 kb on + strand, within SMc03023 at 721.706 kb on + strand, within SMc03023 at 721.707 kb on - strand, within SMc03023 at 721.923 kb on + strand at 721.923 kb on + strand at 721.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 719,165 + -0.3 719,166 - +0.3 719,198 + SMc03021 0.10 -0.7 719,199 - SMc03021 0.10 +0.1 719,199 - SMc03021 0.10 +1.3 719,639 - SMc03021 0.57 -0.3 719,695 + SMc03021 0.63 -2.1 719,695 + SMc03021 0.63 +1.1 719,695 + SMc03021 0.63 +1.0 719,695 + SMc03021 0.63 -1.1 719,695 + SMc03021 0.63 -0.3 719,695 + SMc03021 0.63 -1.5 719,696 - SMc03021 0.63 -0.1 719,867 + SMc03021 0.81 -0.1 720,186 + SMc03022 0.15 -0.3 720,186 + SMc03022 0.15 +0.7 720,187 - SMc03022 0.16 +2.6 720,216 + SMc03022 0.19 +0.7 720,216 + SMc03022 0.19 +0.9 720,216 + +1.9 720,216 + SMc03022 0.19 -0.1 720,444 + SMc03022 0.45 +0.2 720,444 + SMc03022 0.45 -0.8 720,445 - SMc03022 0.45 +0.2 720,543 + SMc03022 0.56 +0.6 720,544 - SMc03022 0.56 +0.1 720,544 - SMc03022 0.56 -1.5 720,681 + SMc03022 0.72 -1.3 720,682 - SMc03022 0.72 -0.1 720,876 + -0.2 720,876 + -1.3 720,877 - -0.3 720,889 + +0.1 720,934 + +1.2 720,968 + -0.3 720,968 + -0.1 721,140 - +0.3 721,140 - +1.2 721,140 - +0.0 721,140 - +0.0 721,140 - -0.1 721,142 - +1.0 721,226 + SMc03023 0.13 -0.1 721,226 + SMc03023 0.13 +0.4 721,226 + SMc03023 0.13 -0.3 721,226 + SMc03023 0.13 -0.5 721,227 - SMc03023 0.13 +0.2 721,227 - SMc03023 0.13 +0.4 721,227 - SMc03023 0.13 +0.7 721,230 - SMc03023 0.13 -0.8 721,230 - SMc03023 0.13 -0.1 721,290 - SMc03023 0.21 +0.2 721,295 + SMc03023 0.22 -2.0 721,296 - SMc03023 0.22 -0.4 721,296 - SMc03023 0.22 -0.5 721,332 - SMc03023 0.26 +0.9 721,332 - SMc03023 0.26 +1.0 721,415 + SMc03023 0.37 -0.2 721,508 - SMc03023 0.49 +0.0 721,568 + SMc03023 0.57 +0.3 721,569 - SMc03023 0.57 -1.6 721,604 + SMc03023 0.61 -1.3 721,706 + SMc03023 0.74 +0.0 721,707 - SMc03023 0.74 -0.5 721,923 + -1.8 721,923 + -0.5 721,924 - -0.1
Or see this region's nucleotide sequence