Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02865 and SMc02866 overlap by 8 nucleotides SMc02866 and SMc02867 are separated by 61 nucleotides SMc02867 and SMc02868 are separated by 10 nucleotides
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
SMc02867: SMc02867 - multidrug-efflux system transmembrane protein, at 219,907 to 223,053
SMc02867
SMc02868: SMc02868 - multidrug efflux system protein, at 223,064 to 224,287
SMc02868
Position (kb) 219
220
221
222
223
224 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866 at 219.815 kb on + strand at 219.816 kb on - strand at 219.816 kb on - strand at 219.848 kb on - strand at 219.884 kb on - strand at 219.909 kb on - strand at 220.292 kb on + strand, within SMc02867 at 220.613 kb on + strand, within SMc02867 at 221.423 kb on + strand, within SMc02867 at 221.423 kb on + strand, within SMc02867 at 221.424 kb on - strand, within SMc02867 at 221.477 kb on + strand, within SMc02867 at 221.654 kb on + strand, within SMc02867 at 222.230 kb on + strand, within SMc02867 at 222.230 kb on + strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.881 kb on + strand at 222.881 kb on + strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.916 kb on - strand at 223.056 kb on + strand at 223.057 kb on - strand at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.404 kb on + strand, within SMc02868 at 223.405 kb on - strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.642 kb on - strand, within SMc02868 at 223.759 kb on + strand, within SMc02868 at 223.760 kb on - strand, within SMc02868 at 223.761 kb on + strand, within SMc02868 at 223.852 kb on - strand, within SMc02868
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 218,960 + SMc02865 0.48 -0.2 218,961 - SMc02865 0.49 +0.6 218,961 - SMc02865 0.49 +0.3 219,007 - SMc02865 0.58 +0.7 219,497 - SMc02866 0.46 +0.0 219,703 + SMc02866 0.78 -0.2 219,815 + -1.5 219,816 - +0.1 219,816 - +0.0 219,848 - +0.2 219,884 - -1.2 219,909 - -3.2 220,292 + SMc02867 0.12 -1.7 220,613 + SMc02867 0.22 -1.7 221,423 + SMc02867 0.48 -0.6 221,423 + SMc02867 0.48 -1.2 221,424 - SMc02867 0.48 -1.8 221,477 + SMc02867 0.50 -3.1 221,654 + SMc02867 0.56 -2.0 222,230 + SMc02867 0.74 -2.4 222,230 + SMc02867 0.74 -2.8 222,231 - SMc02867 0.74 -3.1 222,231 - SMc02867 0.74 -2.1 222,231 - SMc02867 0.74 -2.8 222,881 + -1.7 222,881 + -1.1 222,882 - -1.2 222,882 - -2.7 222,882 - -3.7 222,916 - -1.7 223,056 + -1.0 223,057 - -0.3 223,309 - SMc02868 0.20 -2.6 223,309 - SMc02868 0.20 -1.2 223,309 - SMc02868 0.20 -2.5 223,404 + SMc02868 0.28 -2.4 223,405 - SMc02868 0.28 -2.4 223,641 + SMc02868 0.47 +0.2 223,641 + SMc02868 0.47 -2.2 223,642 - SMc02868 0.47 -4.0 223,759 + SMc02868 0.57 -1.2 223,760 - SMc02868 0.57 -0.6 223,761 + SMc02868 0.57 -2.6 223,852 - SMc02868 0.64 -2.4
Or see this region's nucleotide sequence