Strain Fitness in Sinorhizobium meliloti 1021 around SMc02856

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02855 and SMc02856 are separated by 460 nucleotidesSMc02856 and SMc02857 are separated by 216 nucleotides SMc02855: SMc02855 - hypothetical protein, at 205,860 to 206,783 SMc02855 SMc02856: SMc02856 - penicillin-binding protein, at 207,244 to 209,547 SMc02856 SMc02857: SMc02857 - molecular chaperone DnaK, at 209,764 to 211,689 SMc02857 Position (kb) 207 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.257 kb on + strand, within SMc02855at 206.257 kb on + strand, within SMc02855at 206.257 kb on + strand, within SMc02855at 206.257 kb on + strand, within SMc02855at 206.257 kb on + strand, within SMc02855at 206.258 kb on - strand, within SMc02855at 206.258 kb on - strand, within SMc02855at 206.258 kb on - strand, within SMc02855at 206.623 kb on + strand, within SMc02855at 206.653 kb on + strand, within SMc02855at 206.653 kb on + strand, within SMc02855at 206.725 kb on + strandat 206.758 kb on + strandat 206.759 kb on - strandat 206.846 kb on - strandat 206.860 kb on - strandat 206.963 kb on + strandat 206.963 kb on + strandat 206.963 kb on + strandat 206.988 kb on + strandat 206.988 kb on + strandat 206.988 kb on + strandat 207.010 kb on + strandat 207.139 kb on + strandat 207.165 kb on - strandat 207.272 kb on + strandat 207.272 kb on + strandat 207.526 kb on + strand, within SMc02856at 207.526 kb on + strand, within SMc02856at 207.526 kb on + strand, within SMc02856at 207.549 kb on - strand, within SMc02856at 207.584 kb on - strand, within SMc02856at 207.587 kb on - strand, within SMc02856at 207.672 kb on - strand, within SMc02856at 207.730 kb on + strand, within SMc02856at 207.731 kb on - strand, within SMc02856at 207.772 kb on + strand, within SMc02856at 207.772 kb on + strand, within SMc02856at 207.773 kb on - strand, within SMc02856at 207.961 kb on + strand, within SMc02856at 208.022 kb on - strand, within SMc02856at 208.353 kb on + strand, within SMc02856at 208.354 kb on - strand, within SMc02856at 208.504 kb on + strand, within SMc02856at 208.504 kb on + strand, within SMc02856at 208.504 kb on + strand, within SMc02856at 208.676 kb on - strand, within SMc02856at 208.793 kb on + strand, within SMc02856at 208.793 kb on + strand, within SMc02856at 208.871 kb on - strand, within SMc02856at 208.963 kb on + strand, within SMc02856at 208.963 kb on + strand, within SMc02856at 208.964 kb on - strand, within SMc02856at 209.016 kb on + strand, within SMc02856at 209.017 kb on - strand, within SMc02856at 209.017 kb on - strand, within SMc02856at 209.132 kb on - strand, within SMc02856at 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.647 kb on + strandat 209.649 kb on + strandat 209.649 kb on + strandat 209.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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206,257 + SMc02855 0.43 -0.3
206,257 + SMc02855 0.43 -1.0
206,257 + SMc02855 0.43 -0.7
206,257 + SMc02855 0.43 +0.1
206,257 + SMc02855 0.43 -0.7
206,258 - SMc02855 0.43 -0.3
206,258 - SMc02855 0.43 -0.6
206,258 - SMc02855 0.43 +0.7
206,623 + SMc02855 0.83 -0.6
206,653 + SMc02855 0.86 -0.5
206,653 + SMc02855 0.86 -0.1
206,725 + -0.1
206,758 + -1.6
206,759 - -0.2
206,846 - -0.7
206,860 - +0.2
206,963 + -3.6
206,963 + +0.7
206,963 + -0.5
206,988 + -0.3
206,988 + -1.4
206,988 + +0.0
207,010 + -0.1
207,139 + -1.1
207,165 - -1.1
207,272 + +0.7
207,272 + +1.5
207,526 + SMc02856 0.12 -0.8
207,526 + SMc02856 0.12 +0.3
207,526 + SMc02856 0.12 -1.0
207,549 - SMc02856 0.13 -0.7
207,584 - SMc02856 0.15 -0.8
207,587 - SMc02856 0.15 -0.5
207,672 - SMc02856 0.19 -2.0
207,730 + SMc02856 0.21 -2.6
207,731 - SMc02856 0.21 -1.4
207,772 + SMc02856 0.23 -1.2
207,772 + SMc02856 0.23 -0.6
207,773 - SMc02856 0.23 -0.7
207,961 + SMc02856 0.31 -1.7
208,022 - SMc02856 0.34 -2.1
208,353 + SMc02856 0.48 -1.5
208,354 - SMc02856 0.48 -2.1
208,504 + SMc02856 0.55 -2.4
208,504 + SMc02856 0.55 -0.6
208,504 + SMc02856 0.55 +0.4
208,676 - SMc02856 0.62 -1.1
208,793 + SMc02856 0.67 -3.2
208,793 + SMc02856 0.67 -1.3
208,871 - SMc02856 0.71 -1.5
208,963 + SMc02856 0.75 -0.6
208,963 + SMc02856 0.75 -1.4
208,964 - SMc02856 0.75 -2.5
209,016 + SMc02856 0.77 -1.4
209,017 - SMc02856 0.77 -0.8
209,017 - SMc02856 0.77 -1.1
209,132 - SMc02856 0.82 -1.7
209,647 + +1.8
209,647 + +1.8
209,647 + +0.7
209,647 + +1.5
209,647 + +0.1
209,649 + +1.4
209,649 + -0.3
209,651 + +1.1

Or see this region's nucleotide sequence