Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02488 and SMc02487 are separated by 205 nucleotides SMc02487 and SMc02486 are separated by 36 nucleotides SMc02486 and SMc02485 overlap by 4 nucleotides
SMc02488: SMc02488 - hypothetical protein, at 3,306,832 to 3,307,908
SMc02488
SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520
SMc02487
SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309
SMc02486
SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806
SMc02485
Position (kb)
3308
3309
3310 Strain fitness (log2 ratio)
-1
0
1 at 3307.651 kb on + strand, within SMc02488 at 3308.112 kb on - strand at 3309.598 kb on - strand at 3309.598 kb on - strand at 3309.622 kb on - strand at 3309.765 kb on - strand, within SMc02486 at 3309.765 kb on - strand, within SMc02486 at 3309.835 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.482 kb on - strand, within SMc02485
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 3,307,651 + SMc02488 0.76 +0.6 3,308,112 - -0.2 3,309,598 - +0.1 3,309,598 - +0.1 3,309,622 - -0.1 3,309,765 - SMc02486 0.28 +0.7 3,309,765 - SMc02486 0.28 -1.4 3,309,835 - SMc02486 0.37 -0.3 3,309,844 - SMc02486 0.38 -0.0 3,309,844 - SMc02486 0.38 +0.1 3,310,207 - SMc02486 0.86 -0.3 3,310,207 - SMc02486 0.86 +0.9 3,310,207 - SMc02486 0.86 -1.4 3,310,354 - -0.1 3,310,354 - -1.6 3,310,354 - +0.1 3,310,482 - SMc02485 0.35 +1.0
Or see this region's nucleotide sequence