Strain Fitness in Sinorhizobium meliloti 1021 around SMc01653

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01652 and SMc01653 are separated by 159 nucleotidesSMc01653 and SMc01654 overlap by 4 nucleotidesSMc01654 and SMc01655 overlap by 11 nucleotides SMc01652: SMc01652 - ABC transporter, at 2,449,208 to 2,450,368 SMc01652 SMc01653: SMc01653 - ABC transporter ATP-binding protein, at 2,450,528 to 2,451,568 SMc01653 SMc01654: SMc01654 - ABC transporter permease, at 2,451,565 to 2,452,515 SMc01654 SMc01655: SMc01655 - ABC transporter permease, at 2,452,505 to 2,453,320 SMc01655 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -2 -1 0 1at 2449.543 kb on + strand, within SMc01652at 2449.623 kb on - strand, within SMc01652at 2449.623 kb on - strandat 2449.634 kb on + strand, within SMc01652at 2449.634 kb on + strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.635 kb on - strand, within SMc01652at 2449.661 kb on + strand, within SMc01652at 2449.661 kb on + strand, within SMc01652at 2449.662 kb on - strand, within SMc01652at 2449.662 kb on - strand, within SMc01652at 2449.666 kb on + strand, within SMc01652at 2449.766 kb on + strand, within SMc01652at 2449.766 kb on + strand, within SMc01652at 2449.767 kb on - strand, within SMc01652at 2449.767 kb on - strand, within SMc01652at 2449.802 kb on + strand, within SMc01652at 2449.802 kb on + strand, within SMc01652at 2449.803 kb on - strand, within SMc01652at 2449.844 kb on + strand, within SMc01652at 2449.865 kb on + strand, within SMc01652at 2449.865 kb on + strand, within SMc01652at 2450.111 kb on + strand, within SMc01652at 2450.112 kb on - strand, within SMc01652at 2450.112 kb on - strand, within SMc01652at 2450.112 kb on - strand, within SMc01652at 2450.112 kb on - strand, within SMc01652at 2450.113 kb on + strand, within SMc01652at 2450.113 kb on + strand, within SMc01652at 2450.114 kb on - strand, within SMc01652at 2450.114 kb on - strand, within SMc01652at 2450.114 kb on - strand, within SMc01652at 2450.114 kb on - strand, within SMc01652at 2450.157 kb on + strand, within SMc01652at 2450.157 kb on + strand, within SMc01652at 2450.158 kb on - strand, within SMc01652at 2450.158 kb on - strand, within SMc01652at 2450.158 kb on - strand, within SMc01652at 2450.246 kb on + strand, within SMc01652at 2450.342 kb on + strandat 2450.342 kb on + strandat 2450.343 kb on - strandat 2450.345 kb on - strandat 2450.405 kb on - strandat 2450.563 kb on + strandat 2450.563 kb on + strandat 2450.564 kb on - strandat 2450.823 kb on - strand, within SMc01653at 2450.865 kb on - strand, within SMc01653at 2451.236 kb on + strand, within SMc01653at 2451.237 kb on - strand, within SMc01653at 2451.237 kb on - strand, within SMc01653at 2451.703 kb on + strand, within SMc01654at 2451.770 kb on + strand, within SMc01654at 2451.771 kb on - strand, within SMc01654at 2451.902 kb on - strand, within SMc01654at 2451.947 kb on - strand, within SMc01654at 2451.947 kb on - strand, within SMc01654at 2451.979 kb on + strand, within SMc01654at 2451.980 kb on - strand, within SMc01654at 2451.994 kb on + strand, within SMc01654at 2451.995 kb on - strand, within SMc01654at 2451.995 kb on - strand, within SMc01654at 2451.995 kb on - strand, within SMc01654at 2452.123 kb on + strand, within SMc01654at 2452.124 kb on - strand, within SMc01654at 2452.124 kb on - strand, within SMc01654at 2452.125 kb on + strand, within SMc01654at 2452.126 kb on - strand, within SMc01654at 2452.150 kb on + strand, within SMc01654at 2452.150 kb on + strand, within SMc01654at 2452.151 kb on - strand, within SMc01654at 2452.340 kb on - strandat 2452.340 kb on - strand, within SMc01654at 2452.340 kb on - strand, within SMc01654

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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2,449,543 + SMc01652 0.29 -0.3
2,449,623 - SMc01652 0.36 -0.3
2,449,623 - +1.7
2,449,634 + SMc01652 0.37 -0.3
2,449,634 + SMc01652 0.37 +0.3
2,449,635 - SMc01652 0.37 +0.1
2,449,635 - SMc01652 0.37 +0.5
2,449,635 - SMc01652 0.37 -1.1
2,449,661 + SMc01652 0.39 -0.2
2,449,661 + SMc01652 0.39 +0.3
2,449,662 - SMc01652 0.39 +0.1
2,449,662 - SMc01652 0.39 +0.3
2,449,666 + SMc01652 0.39 -1.0
2,449,766 + SMc01652 0.48 +0.0
2,449,766 + SMc01652 0.48 +0.1
2,449,767 - SMc01652 0.48 +0.0
2,449,767 - SMc01652 0.48 -0.1
2,449,802 + SMc01652 0.51 -0.2
2,449,802 + SMc01652 0.51 +0.3
2,449,803 - SMc01652 0.51 -0.4
2,449,844 + SMc01652 0.55 -0.0
2,449,865 + SMc01652 0.57 -0.4
2,449,865 + SMc01652 0.57 -1.2
2,450,111 + SMc01652 0.78 +0.5
2,450,112 - SMc01652 0.78 +0.1
2,450,112 - SMc01652 0.78 +0.4
2,450,112 - SMc01652 0.78 +0.4
2,450,112 - SMc01652 0.78 -0.6
2,450,113 + SMc01652 0.78 +0.5
2,450,113 + SMc01652 0.78 +0.4
2,450,114 - SMc01652 0.78 +0.5
2,450,114 - SMc01652 0.78 +0.9
2,450,114 - SMc01652 0.78 -0.9
2,450,114 - SMc01652 0.78 +0.0
2,450,157 + SMc01652 0.82 -0.5
2,450,157 + SMc01652 0.82 +0.9
2,450,158 - SMc01652 0.82 -0.6
2,450,158 - SMc01652 0.82 +0.4
2,450,158 - SMc01652 0.82 +0.8
2,450,246 + SMc01652 0.89 -0.4
2,450,342 + +0.5
2,450,342 + -0.6
2,450,343 - -1.4
2,450,345 - -0.9
2,450,405 - -2.4
2,450,563 + +0.7
2,450,563 + -1.4
2,450,564 - -0.2
2,450,823 - SMc01653 0.28 -0.5
2,450,865 - SMc01653 0.32 -0.1
2,451,236 + SMc01653 0.68 -2.1
2,451,237 - SMc01653 0.68 -1.8
2,451,237 - SMc01653 0.68 -1.0
2,451,703 + SMc01654 0.15 -0.2
2,451,770 + SMc01654 0.22 -1.6
2,451,771 - SMc01654 0.22 +0.5
2,451,902 - SMc01654 0.35 -2.0
2,451,947 - SMc01654 0.40 -0.2
2,451,947 - SMc01654 0.40 +0.1
2,451,979 + SMc01654 0.44 +0.1
2,451,980 - SMc01654 0.44 +0.1
2,451,994 + SMc01654 0.45 +0.5
2,451,995 - SMc01654 0.45 -0.4
2,451,995 - SMc01654 0.45 -0.3
2,451,995 - SMc01654 0.45 +0.0
2,452,123 + SMc01654 0.59 -1.0
2,452,124 - SMc01654 0.59 -1.0
2,452,124 - SMc01654 0.59 +0.7
2,452,125 + SMc01654 0.59 -0.5
2,452,126 - SMc01654 0.59 +0.0
2,452,150 + SMc01654 0.62 -0.4
2,452,150 + SMc01654 0.62 -0.1
2,452,151 - SMc01654 0.62 +0.4
2,452,340 - +1.7
2,452,340 - SMc01654 0.81 -0.4
2,452,340 - SMc01654 0.81 +0.3

Or see this region's nucleotide sequence