Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01457 and SMc01458 overlap by 4 nucleotides SMc01458 and SMc01459 are separated by 303 nucleotides
SMc01457: SMc01457 - transport transmembrane protein, at 2,300,845 to 2,303,979
SMc01457
SMc01458: SMc01458 - transporter, at 2,303,976 to 2,305,172
SMc01458
SMc01459: SMc01459 - hypothetical protein, at 2,305,476 to 2,306,297
SMc01459
Position (kb)
2303
2304
2305
2306 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2303.294 kb on + strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2303.295 kb on - strand, within SMc01457 at 2304.185 kb on + strand, within SMc01458 at 2304.186 kb on - strand, within SMc01458 at 2304.523 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.531 kb on + strand, within SMc01458 at 2304.532 kb on - strand, within SMc01458 at 2304.532 kb on - strand, within SMc01458 at 2304.533 kb on + strand, within SMc01458 at 2304.533 kb on + strand, within SMc01458 at 2304.534 kb on - strand, within SMc01458 at 2304.863 kb on + strand, within SMc01458 at 2305.303 kb on + strand at 2305.397 kb on + strand at 2305.398 kb on - strand at 2305.591 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.105 kb on + strand, within SMc01459 at 2306.106 kb on - strand, within SMc01459 at 2306.151 kb on + strand, within SMc01459
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 2,303,294 + SMc01457 0.78 -1.6 2,303,295 - SMc01457 0.78 -3.9 2,303,295 - SMc01457 0.78 +0.1 2,303,295 - SMc01457 0.78 -1.3 2,303,295 - SMc01457 0.78 -2.0 2,304,185 + SMc01458 0.17 +0.1 2,304,186 - SMc01458 0.18 -1.4 2,304,523 + SMc01458 0.46 -1.5 2,304,531 + SMc01458 0.46 -1.4 2,304,531 + SMc01458 0.46 -0.7 2,304,531 + SMc01458 0.46 +0.2 2,304,531 + SMc01458 0.46 -1.0 2,304,531 + SMc01458 0.46 -1.1 2,304,532 - SMc01458 0.46 -1.5 2,304,532 - SMc01458 0.46 -1.2 2,304,533 + SMc01458 0.47 -2.1 2,304,533 + SMc01458 0.47 -0.1 2,304,534 - SMc01458 0.47 -1.6 2,304,863 + SMc01458 0.74 -1.5 2,305,303 + -0.5 2,305,397 + -1.9 2,305,398 - +0.6 2,305,591 + SMc01459 0.14 -0.6 2,306,105 + SMc01459 0.77 +0.5 2,306,105 + SMc01459 0.77 +0.1 2,306,106 - SMc01459 0.77 -0.2 2,306,151 + SMc01459 0.82 +0.1
Or see this region's nucleotide sequence