Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0677 and SMa0678 are separated by 29 nucleotides SMa0678 and SMa0680 are separated by 27 nucleotides
SMa0677: SMa0677 - ABC transporter substrate-binding protein, at 361,696 to 362,637
SMa0677
SMa0678: SMa0678 - putrescine transporter, at 362,667 to 364,025
SMa0678
SMa0680: SMa0680 - amino acid (ornithine, lysine, arginine) decarboxylase, at 364,053 to 366,401
SMa0680
Position (kb) 362
363
364
365 Strain fitness (log2 ratio) -1
0
1 at 361.737 kb on + strand at 361.872 kb on - strand, within SMa0677 at 361.872 kb on - strand, within SMa0677 at 361.961 kb on - strand, within SMa0677 at 362.003 kb on + strand, within SMa0677 at 362.004 kb on - strand, within SMa0677 at 362.048 kb on - strand, within SMa0677 at 362.076 kb on + strand, within SMa0677 at 362.210 kb on - strand, within SMa0677 at 362.317 kb on + strand, within SMa0677 at 362.317 kb on + strand, within SMa0677 at 362.572 kb on + strand at 362.722 kb on + strand at 362.723 kb on - strand at 362.786 kb on - strand at 362.786 kb on - strand at 362.803 kb on + strand, within SMa0678 at 362.803 kb on + strand, within SMa0678 at 362.804 kb on - strand, within SMa0678 at 362.804 kb on - strand, within SMa0678 at 362.905 kb on + strand, within SMa0678 at 362.981 kb on + strand, within SMa0678 at 363.255 kb on - strand, within SMa0678 at 363.284 kb on - strand, within SMa0678 at 363.287 kb on + strand, within SMa0678 at 363.288 kb on - strand, within SMa0678 at 363.288 kb on - strand, within SMa0678 at 363.497 kb on + strand, within SMa0678 at 363.593 kb on + strand, within SMa0678 at 363.724 kb on + strand, within SMa0678 at 363.746 kb on - strand, within SMa0678 at 363.775 kb on + strand, within SMa0678 at 363.776 kb on - strand, within SMa0678 at 363.808 kb on - strand, within SMa0678 at 363.808 kb on - strand, within SMa0678 at 363.915 kb on + strand at 363.915 kb on + strand at 363.918 kb on + strand at 364.221 kb on + strand at 364.222 kb on - strand at 364.243 kb on + strand at 364.244 kb on - strand at 364.297 kb on + strand, within SMa0680 at 364.327 kb on + strand, within SMa0680 at 364.328 kb on - strand at 364.415 kb on - strand, within SMa0680 at 364.453 kb on + strand, within SMa0680 at 364.462 kb on + strand, within SMa0680 at 364.494 kb on + strand, within SMa0680 at 364.495 kb on - strand, within SMa0680 at 364.495 kb on - strand, within SMa0680 at 364.605 kb on + strand, within SMa0680 at 364.605 kb on + strand, within SMa0680 at 364.655 kb on - strand, within SMa0680 at 364.713 kb on + strand, within SMa0680 at 364.714 kb on - strand, within SMa0680 at 364.714 kb on - strand, within SMa0680 at 364.733 kb on + strand, within SMa0680 at 364.734 kb on - strand, within SMa0680 at 364.734 kb on - strand, within SMa0680 at 364.734 kb on - strand, within SMa0680 at 364.759 kb on + strand, within SMa0680 at 364.760 kb on - strand, within SMa0680 at 364.760 kb on - strand, within SMa0680 at 364.781 kb on - strand, within SMa0680
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 361,737 + +0.0 361,872 - SMa0677 0.19 +0.8 361,872 - SMa0677 0.19 -0.1 361,961 - SMa0677 0.28 -0.5 362,003 + SMa0677 0.33 +0.2 362,004 - SMa0677 0.33 +0.6 362,048 - SMa0677 0.37 +0.3 362,076 + SMa0677 0.40 +0.4 362,210 - SMa0677 0.55 -0.3 362,317 + SMa0677 0.66 -0.1 362,317 + SMa0677 0.66 -0.4 362,572 + +0.1 362,722 + -1.7 362,723 - -0.6 362,786 - -0.2 362,786 - +1.0 362,803 + SMa0678 0.10 -0.6 362,803 + SMa0678 0.10 -0.8 362,804 - SMa0678 0.10 +0.1 362,804 - SMa0678 0.10 -0.9 362,905 + SMa0678 0.18 -0.7 362,981 + SMa0678 0.23 -0.2 363,255 - SMa0678 0.43 -0.3 363,284 - SMa0678 0.45 -0.5 363,287 + SMa0678 0.46 -0.1 363,288 - SMa0678 0.46 -0.6 363,288 - SMa0678 0.46 -0.1 363,497 + SMa0678 0.61 -0.8 363,593 + SMa0678 0.68 -0.5 363,724 + SMa0678 0.78 +0.8 363,746 - SMa0678 0.79 -0.3 363,775 + SMa0678 0.82 -0.7 363,776 - SMa0678 0.82 -0.5 363,808 - SMa0678 0.84 -0.1 363,808 - SMa0678 0.84 -0.4 363,915 + -0.1 363,915 + +0.2 363,918 + -0.1 364,221 + -0.1 364,222 - +0.2 364,243 + +0.2 364,244 - +0.8 364,297 + SMa0680 0.10 +0.8 364,327 + SMa0680 0.12 -1.2 364,328 - -1.0 364,415 - SMa0680 0.15 -0.7 364,453 + SMa0680 0.17 -0.1 364,462 + SMa0680 0.17 -0.0 364,494 + SMa0680 0.19 -0.4 364,495 - SMa0680 0.19 -0.0 364,495 - SMa0680 0.19 -0.5 364,605 + SMa0680 0.23 -1.0 364,605 + SMa0680 0.23 +0.0 364,655 - SMa0680 0.26 -0.2 364,713 + SMa0680 0.28 +0.5 364,714 - SMa0680 0.28 -0.2 364,714 - SMa0680 0.28 +0.8 364,733 + SMa0680 0.29 -0.8 364,734 - SMa0680 0.29 +0.3 364,734 - SMa0680 0.29 +0.4 364,734 - SMa0680 0.29 +1.0 364,759 + SMa0680 0.30 -0.7 364,760 - SMa0680 0.30 +0.4 364,760 - SMa0680 0.30 +1.5 364,781 - SMa0680 0.31 -0.3
Or see this region's nucleotide sequence