Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21572

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21570 and SM_b21571 are separated by 141 nucleotidesSM_b21571 and SM_b21572 are separated by 97 nucleotidesSM_b21572 and SM_b21573 are separated by 96 nucleotides SM_b21570: SM_b21570 - NADH-dependent oxidase, at 1,108,027 to 1,110,063 _b21570 SM_b21571: SM_b21571 - TetR family transcriptional regulator, at 1,110,205 to 1,110,831 _b21571 SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930 _b21572 SM_b21573: SM_b21573 - hypothetical protein, at 1,112,027 to 1,113,010 _b21573 Position (kb) 1110 1111 1112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1109.934 kb on + strandat 1110.035 kb on + strandat 1110.036 kb on - strandat 1110.096 kb on + strandat 1110.096 kb on + strandat 1110.097 kb on - strandat 1110.097 kb on - strandat 1110.200 kb on + strandat 1110.268 kb on + strand, within SM_b21571at 1110.353 kb on - strand, within SM_b21571at 1110.431 kb on + strand, within SM_b21571at 1110.448 kb on + strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.676 kb on + strand, within SM_b21571at 1110.677 kb on - strand, within SM_b21571at 1110.694 kb on + strand, within SM_b21571at 1110.695 kb on - strand, within SM_b21571at 1110.696 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.723 kb on - strand, within SM_b21571at 1110.829 kb on + strandat 1110.830 kb on - strandat 1110.871 kb on + strandat 1110.873 kb on + strandat 1110.874 kb on - strandat 1110.874 kb on - strandat 1110.927 kb on + strandat 1110.927 kb on + strandat 1110.928 kb on - strandat 1110.928 kb on - strandat 1111.231 kb on + strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.441 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.556 kb on + strand, within SM_b21572at 1111.557 kb on - strand, within SM_b21572at 1111.567 kb on + strand, within SM_b21572at 1111.586 kb on + strand, within SM_b21572at 1111.587 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572at 1112.249 kb on + strand, within SM_b21573at 1112.250 kb on - strand, within SM_b21573at 1112.252 kb on + strand, within SM_b21573at 1112.253 kb on - strand, within SM_b21573at 1112.253 kb on - strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.376 kb on - strand, within SM_b21573at 1112.376 kb on - strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.611 kb on - strand, within SM_b21573at 1112.611 kb on - strandat 1112.675 kb on + strand, within SM_b21573at 1112.762 kb on + strand, within SM_b21573at 1112.763 kb on - strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.874 kb on - strand, within SM_b21573at 1112.874 kb on - strand, within SM_b21573at 1112.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,109,934 + -0.6
1,110,035 + -0.2
1,110,036 - -0.3
1,110,096 + +0.5
1,110,096 + -2.3
1,110,097 - +0.1
1,110,097 - +0.7
1,110,200 + -0.8
1,110,268 + SM_b21571 0.10 -0.2
1,110,353 - SM_b21571 0.24 -0.0
1,110,431 + SM_b21571 0.36 +1.0
1,110,448 + SM_b21571 0.39 -0.3
1,110,449 - SM_b21571 0.39 -0.3
1,110,449 - SM_b21571 0.39 -0.0
1,110,449 - SM_b21571 0.39 +0.2
1,110,660 - SM_b21571 0.73 +0.6
1,110,660 - SM_b21571 0.73 -0.9
1,110,660 - SM_b21571 0.73 -1.2
1,110,660 - SM_b21571 0.73 +0.1
1,110,676 + SM_b21571 0.75 +0.3
1,110,677 - SM_b21571 0.75 +0.5
1,110,694 + SM_b21571 0.78 -0.1
1,110,695 - SM_b21571 0.78 +0.6
1,110,696 + SM_b21571 0.78 +0.4
1,110,722 + SM_b21571 0.82 +0.6
1,110,722 + SM_b21571 0.82 +1.1
1,110,722 + SM_b21571 0.82 -0.0
1,110,723 - SM_b21571 0.83 +0.3
1,110,829 + -0.2
1,110,830 - -1.3
1,110,871 + -1.1
1,110,873 + -2.1
1,110,874 - -0.1
1,110,874 - +0.1
1,110,927 + -0.8
1,110,927 + -0.4
1,110,928 - +0.1
1,110,928 - -0.0
1,111,231 + SM_b21572 0.30 -2.4
1,111,232 - SM_b21572 0.30 -0.1
1,111,232 - SM_b21572 0.30 +0.1
1,111,232 - SM_b21572 0.30 -1.0
1,111,232 - SM_b21572 0.30 -0.0
1,111,232 - SM_b21572 0.30 -1.0
1,111,441 + SM_b21572 0.51 -0.4
1,111,526 + SM_b21572 0.60 +0.1
1,111,526 + SM_b21572 0.60 -0.6
1,111,527 - SM_b21572 0.60 -0.6
1,111,527 - SM_b21572 0.60 -0.3
1,111,549 + SM_b21572 0.62 -0.1
1,111,549 + SM_b21572 0.62 -0.7
1,111,549 + SM_b21572 0.62 +0.1
1,111,549 + SM_b21572 0.62 +0.4
1,111,550 - SM_b21572 0.62 -0.8
1,111,550 - SM_b21572 0.62 -0.4
1,111,550 - SM_b21572 0.62 +0.9
1,111,553 + SM_b21572 0.62 +0.3
1,111,553 + SM_b21572 0.62 -0.2
1,111,554 - SM_b21572 0.62 -0.8
1,111,554 - SM_b21572 0.62 +0.6
1,111,556 + SM_b21572 0.63 -0.3
1,111,557 - SM_b21572 0.63 +0.0
1,111,567 + SM_b21572 0.64 -0.9
1,111,586 + SM_b21572 0.66 -1.0
1,111,587 - SM_b21572 0.66 -0.2
1,111,758 - SM_b21572 0.83 -0.1
1,111,758 - SM_b21572 0.83 -0.6
1,112,249 + SM_b21573 0.23 -0.4
1,112,250 - SM_b21573 0.23 -0.4
1,112,252 + SM_b21573 0.23 -0.3
1,112,253 - SM_b21573 0.23 -0.4
1,112,253 - SM_b21573 0.23 +0.5
1,112,375 + SM_b21573 0.35 +1.4
1,112,375 + SM_b21573 0.35 -1.0
1,112,375 + SM_b21573 0.35 -1.3
1,112,376 - SM_b21573 0.35 -0.2
1,112,376 - SM_b21573 0.35 +0.1
1,112,464 + SM_b21573 0.44 +0.2
1,112,464 + SM_b21573 0.44 -0.1
1,112,464 + SM_b21573 0.44 -0.5
1,112,465 - SM_b21573 0.45 +1.1
1,112,465 - SM_b21573 0.45 -0.3
1,112,465 - SM_b21573 0.45 +0.2
1,112,610 + SM_b21573 0.59 -0.1
1,112,610 + SM_b21573 0.59 +0.0
1,112,610 + SM_b21573 0.59 -0.7
1,112,611 - SM_b21573 0.59 -0.2
1,112,611 - +3.3
1,112,675 + SM_b21573 0.66 -0.4
1,112,762 + SM_b21573 0.75 -0.4
1,112,763 - SM_b21573 0.75 -0.1
1,112,873 + SM_b21573 0.86 +1.1
1,112,873 + SM_b21573 0.86 +0.3
1,112,873 + SM_b21573 0.86 -0.3
1,112,873 + SM_b21573 0.86 -0.1
1,112,874 - SM_b21573 0.86 -2.2
1,112,874 - SM_b21573 0.86 -0.0
1,112,912 - +0.4

Or see this region's nucleotide sequence