Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21570 and SM_b21571 are separated by 141 nucleotides SM_b21571 and SM_b21572 are separated by 97 nucleotides SM_b21572 and SM_b21573 are separated by 96 nucleotides
SM_b21570: SM_b21570 - NADH-dependent oxidase, at 1,108,027 to 1,110,063
_b21570
SM_b21571: SM_b21571 - TetR family transcriptional regulator, at 1,110,205 to 1,110,831
_b21571
SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930
_b21572
SM_b21573: SM_b21573 - hypothetical protein, at 1,112,027 to 1,113,010
_b21573
Position (kb)
1110
1111
1112 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1109.934 kb on + strand at 1110.035 kb on + strand at 1110.036 kb on - strand at 1110.096 kb on + strand at 1110.096 kb on + strand at 1110.097 kb on - strand at 1110.097 kb on - strand at 1110.200 kb on + strand at 1110.268 kb on + strand, within SM_b21571 at 1110.353 kb on - strand, within SM_b21571 at 1110.431 kb on + strand, within SM_b21571 at 1110.448 kb on + strand, within SM_b21571 at 1110.449 kb on - strand, within SM_b21571 at 1110.449 kb on - strand, within SM_b21571 at 1110.449 kb on - strand, within SM_b21571 at 1110.660 kb on - strand, within SM_b21571 at 1110.660 kb on - strand, within SM_b21571 at 1110.660 kb on - strand, within SM_b21571 at 1110.660 kb on - strand, within SM_b21571 at 1110.676 kb on + strand, within SM_b21571 at 1110.677 kb on - strand, within SM_b21571 at 1110.694 kb on + strand, within SM_b21571 at 1110.695 kb on - strand, within SM_b21571 at 1110.696 kb on + strand, within SM_b21571 at 1110.722 kb on + strand, within SM_b21571 at 1110.722 kb on + strand, within SM_b21571 at 1110.722 kb on + strand, within SM_b21571 at 1110.723 kb on - strand, within SM_b21571 at 1110.829 kb on + strand at 1110.830 kb on - strand at 1110.871 kb on + strand at 1110.873 kb on + strand at 1110.874 kb on - strand at 1110.874 kb on - strand at 1110.927 kb on + strand at 1110.927 kb on + strand at 1110.928 kb on - strand at 1110.928 kb on - strand at 1111.231 kb on + strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.441 kb on + strand, within SM_b21572 at 1111.526 kb on + strand, within SM_b21572 at 1111.526 kb on + strand, within SM_b21572 at 1111.527 kb on - strand, within SM_b21572 at 1111.527 kb on - strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.553 kb on + strand, within SM_b21572 at 1111.553 kb on + strand, within SM_b21572 at 1111.554 kb on - strand, within SM_b21572 at 1111.554 kb on - strand, within SM_b21572 at 1111.556 kb on + strand, within SM_b21572 at 1111.557 kb on - strand, within SM_b21572 at 1111.567 kb on + strand, within SM_b21572 at 1111.586 kb on + strand, within SM_b21572 at 1111.587 kb on - strand, within SM_b21572 at 1111.758 kb on - strand, within SM_b21572 at 1111.758 kb on - strand, within SM_b21572 at 1112.249 kb on + strand, within SM_b21573 at 1112.250 kb on - strand, within SM_b21573 at 1112.252 kb on + strand, within SM_b21573 at 1112.253 kb on - strand, within SM_b21573 at 1112.253 kb on - strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.376 kb on - strand, within SM_b21573 at 1112.376 kb on - strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.611 kb on - strand, within SM_b21573 at 1112.611 kb on - strand at 1112.675 kb on + strand, within SM_b21573 at 1112.762 kb on + strand, within SM_b21573 at 1112.763 kb on - strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.874 kb on - strand, within SM_b21573 at 1112.874 kb on - strand, within SM_b21573 at 1112.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,109,934 + -0.6 1,110,035 + -0.2 1,110,036 - -0.3 1,110,096 + +0.5 1,110,096 + -2.3 1,110,097 - +0.1 1,110,097 - +0.7 1,110,200 + -0.8 1,110,268 + SM_b21571 0.10 -0.2 1,110,353 - SM_b21571 0.24 -0.0 1,110,431 + SM_b21571 0.36 +1.0 1,110,448 + SM_b21571 0.39 -0.3 1,110,449 - SM_b21571 0.39 -0.3 1,110,449 - SM_b21571 0.39 -0.0 1,110,449 - SM_b21571 0.39 +0.2 1,110,660 - SM_b21571 0.73 +0.6 1,110,660 - SM_b21571 0.73 -0.9 1,110,660 - SM_b21571 0.73 -1.2 1,110,660 - SM_b21571 0.73 +0.1 1,110,676 + SM_b21571 0.75 +0.3 1,110,677 - SM_b21571 0.75 +0.5 1,110,694 + SM_b21571 0.78 -0.1 1,110,695 - SM_b21571 0.78 +0.6 1,110,696 + SM_b21571 0.78 +0.4 1,110,722 + SM_b21571 0.82 +0.6 1,110,722 + SM_b21571 0.82 +1.1 1,110,722 + SM_b21571 0.82 -0.0 1,110,723 - SM_b21571 0.83 +0.3 1,110,829 + -0.2 1,110,830 - -1.3 1,110,871 + -1.1 1,110,873 + -2.1 1,110,874 - -0.1 1,110,874 - +0.1 1,110,927 + -0.8 1,110,927 + -0.4 1,110,928 - +0.1 1,110,928 - -0.0 1,111,231 + SM_b21572 0.30 -2.4 1,111,232 - SM_b21572 0.30 -0.1 1,111,232 - SM_b21572 0.30 +0.1 1,111,232 - SM_b21572 0.30 -1.0 1,111,232 - SM_b21572 0.30 -0.0 1,111,232 - SM_b21572 0.30 -1.0 1,111,441 + SM_b21572 0.51 -0.4 1,111,526 + SM_b21572 0.60 +0.1 1,111,526 + SM_b21572 0.60 -0.6 1,111,527 - SM_b21572 0.60 -0.6 1,111,527 - SM_b21572 0.60 -0.3 1,111,549 + SM_b21572 0.62 -0.1 1,111,549 + SM_b21572 0.62 -0.7 1,111,549 + SM_b21572 0.62 +0.1 1,111,549 + SM_b21572 0.62 +0.4 1,111,550 - SM_b21572 0.62 -0.8 1,111,550 - SM_b21572 0.62 -0.4 1,111,550 - SM_b21572 0.62 +0.9 1,111,553 + SM_b21572 0.62 +0.3 1,111,553 + SM_b21572 0.62 -0.2 1,111,554 - SM_b21572 0.62 -0.8 1,111,554 - SM_b21572 0.62 +0.6 1,111,556 + SM_b21572 0.63 -0.3 1,111,557 - SM_b21572 0.63 +0.0 1,111,567 + SM_b21572 0.64 -0.9 1,111,586 + SM_b21572 0.66 -1.0 1,111,587 - SM_b21572 0.66 -0.2 1,111,758 - SM_b21572 0.83 -0.1 1,111,758 - SM_b21572 0.83 -0.6 1,112,249 + SM_b21573 0.23 -0.4 1,112,250 - SM_b21573 0.23 -0.4 1,112,252 + SM_b21573 0.23 -0.3 1,112,253 - SM_b21573 0.23 -0.4 1,112,253 - SM_b21573 0.23 +0.5 1,112,375 + SM_b21573 0.35 +1.4 1,112,375 + SM_b21573 0.35 -1.0 1,112,375 + SM_b21573 0.35 -1.3 1,112,376 - SM_b21573 0.35 -0.2 1,112,376 - SM_b21573 0.35 +0.1 1,112,464 + SM_b21573 0.44 +0.2 1,112,464 + SM_b21573 0.44 -0.1 1,112,464 + SM_b21573 0.44 -0.5 1,112,465 - SM_b21573 0.45 +1.1 1,112,465 - SM_b21573 0.45 -0.3 1,112,465 - SM_b21573 0.45 +0.2 1,112,610 + SM_b21573 0.59 -0.1 1,112,610 + SM_b21573 0.59 +0.0 1,112,610 + SM_b21573 0.59 -0.7 1,112,611 - SM_b21573 0.59 -0.2 1,112,611 - +3.3 1,112,675 + SM_b21573 0.66 -0.4 1,112,762 + SM_b21573 0.75 -0.4 1,112,763 - SM_b21573 0.75 -0.1 1,112,873 + SM_b21573 0.86 +1.1 1,112,873 + SM_b21573 0.86 +0.3 1,112,873 + SM_b21573 0.86 -0.3 1,112,873 + SM_b21573 0.86 -0.1 1,112,874 - SM_b21573 0.86 -2.2 1,112,874 - SM_b21573 0.86 -0.0 1,112,912 - +0.4
Or see this region's nucleotide sequence