Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21223

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21222 and SM_b21223 are separated by 207 nucleotidesSM_b21223 and SM_b21224 overlap by 1 nucleotides SM_b21222: SM_b21222 - transcriptional regulator, at 785,200 to 786,429 _b21222 SM_b21223: SM_b21223 - sulfate adenylyltransferase subunit 2, at 786,637 to 787,536 _b21223 SM_b21224: SM_b21224 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 787,536 to 789,437 _b21224 Position (kb) 786 787 788Strain fitness (log2 ratio) -1 0 1at 785.875 kb on + strand, within SM_b21222at 785.875 kb on + strand, within SM_b21222at 785.884 kb on + strand, within SM_b21222at 786.119 kb on + strand, within SM_b21222at 786.120 kb on - strand, within SM_b21222at 786.120 kb on - strand, within SM_b21222at 786.120 kb on - strand, within SM_b21222at 786.206 kb on + strand, within SM_b21222at 786.472 kb on + strandat 786.473 kb on - strandat 786.506 kb on - strandat 788.490 kb on - strand, within SM_b21224at 788.490 kb on - strand, within SM_b21224at 788.490 kb on - strand, within SM_b21224at 788.490 kb on - strand, within SM_b21224

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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785,875 + SM_b21222 0.55 -0.4
785,875 + SM_b21222 0.55 -0.7
785,884 + SM_b21222 0.56 -1.1
786,119 + SM_b21222 0.75 -1.0
786,120 - SM_b21222 0.75 -0.6
786,120 - SM_b21222 0.75 +0.5
786,120 - SM_b21222 0.75 -0.3
786,206 + SM_b21222 0.82 +0.1
786,472 + +0.5
786,473 - +0.3
786,506 - -1.7
788,490 - SM_b21224 0.50 -0.4
788,490 - SM_b21224 0.50 -0.6
788,490 - SM_b21224 0.50 +1.0
788,490 - SM_b21224 0.50 +0.4

Or see this region's nucleotide sequence