Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20562 and SM_b20563 are separated by 114 nucleotides SM_b20563 and SM_b20803 are separated by 230 nucleotides
SM_b20562: SM_b20562 - hypothetical protein, at 586,186 to 587,100
_b20562
SM_b20563: SM_b20563 - hypothetical protein, at 587,215 to 588,129
_b20563
SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190
_b20803
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 586.250 kb on + strand at 586.251 kb on - strand at 586.256 kb on + strand at 586.256 kb on + strand at 586.257 kb on - strand at 586.257 kb on - strand at 586.372 kb on - strand, within SM_b20562 at 586.372 kb on - strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.637 kb on + strand, within SM_b20562 at 586.638 kb on - strand, within SM_b20562 at 586.643 kb on + strand, within SM_b20562 at 586.644 kb on - strand, within SM_b20562 at 586.722 kb on + strand, within SM_b20562 at 586.759 kb on + strand, within SM_b20562 at 586.778 kb on + strand, within SM_b20562 at 586.779 kb on - strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.881 kb on + strand, within SM_b20562 at 586.882 kb on - strand, within SM_b20562 at 586.889 kb on + strand, within SM_b20562 at 586.942 kb on + strand, within SM_b20562 at 586.943 kb on - strand, within SM_b20562 at 587.073 kb on + strand at 587.074 kb on - strand at 587.213 kb on + strand at 587.213 kb on + strand at 587.668 kb on - strand, within SM_b20563 at 587.668 kb on - strand, within SM_b20563 at 587.784 kb on - strand, within SM_b20563 at 588.011 kb on + strand, within SM_b20563 at 588.100 kb on - strand at 588.100 kb on - strand at 588.131 kb on + strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.132 kb on - strand at 588.147 kb on + strand at 588.222 kb on + strand at 588.259 kb on - strand at 588.269 kb on + strand at 588.272 kb on - strand at 588.272 kb on - strand at 588.308 kb on + strand at 588.433 kb on - strand at 588.451 kb on + strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.818 kb on - strand, within SM_b20803 at 588.978 kb on - strand, within SM_b20803 at 589.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 586,250 + +1.3 586,251 - -0.6 586,256 + -0.2 586,256 + +0.6 586,257 - -0.1 586,257 - +0.3 586,372 - SM_b20562 0.20 +1.5 586,372 - SM_b20562 0.20 +0.0 586,457 + SM_b20562 0.30 +2.3 586,457 + SM_b20562 0.30 +1.1 586,457 + SM_b20562 0.30 -0.0 586,458 - SM_b20562 0.30 +1.1 586,458 - SM_b20562 0.30 +0.5 586,612 + SM_b20562 0.47 +0.8 586,612 + SM_b20562 0.47 +1.7 586,612 + SM_b20562 0.47 +1.2 586,613 - SM_b20562 0.47 +0.6 586,613 - SM_b20562 0.47 +0.5 586,613 - SM_b20562 0.47 -0.6 586,613 - SM_b20562 0.47 +0.4 586,637 + SM_b20562 0.49 +0.6 586,638 - SM_b20562 0.49 +1.1 586,643 + SM_b20562 0.50 +1.1 586,644 - SM_b20562 0.50 +0.1 586,722 + SM_b20562 0.59 -0.2 586,759 + SM_b20562 0.63 +1.0 586,778 + SM_b20562 0.65 +0.3 586,779 - SM_b20562 0.65 +1.6 586,838 + SM_b20562 0.71 +2.0 586,838 + SM_b20562 0.71 +0.3 586,838 + SM_b20562 0.71 -0.5 586,839 - SM_b20562 0.71 +0.2 586,839 - SM_b20562 0.71 +0.1 586,881 + SM_b20562 0.76 +0.5 586,882 - SM_b20562 0.76 +1.3 586,889 + SM_b20562 0.77 +1.3 586,942 + SM_b20562 0.83 +0.1 586,943 - SM_b20562 0.83 +0.5 587,073 + +0.8 587,074 - +1.0 587,213 + -0.2 587,213 + +0.1 587,668 - SM_b20563 0.50 -2.4 587,668 - SM_b20563 0.50 -3.1 587,784 - SM_b20563 0.62 -3.1 588,011 + SM_b20563 0.87 -2.0 588,100 - -2.6 588,100 - -2.9 588,131 + -1.1 588,132 - -0.3 588,132 - +1.0 588,132 - -0.6 588,132 - -0.1 588,147 + -3.2 588,222 + -1.5 588,259 - -0.8 588,269 + -2.6 588,272 - -1.3 588,272 - -1.4 588,308 + +0.3 588,433 - -0.2 588,451 + SM_b20803 0.11 -0.5 588,606 - SM_b20803 0.30 -2.2 588,606 - SM_b20803 0.30 -0.2 588,817 + SM_b20803 0.55 -0.8 588,817 + SM_b20803 0.55 -1.6 588,818 - SM_b20803 0.55 -0.2 588,978 - SM_b20803 0.74 -2.7 589,109 - -0.7
Or see this region's nucleotide sequence