Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20242 and SM_b20243 are separated by 4 nucleotides SM_b20243 and SM_b20244 overlap by 4 nucleotides
SM_b20242: SM_b20242 - hypothetical protein, at 246,457 to 247,587
_b20242
SM_b20243: SM_b20243 - glycosyltransferase, at 247,592 to 248,743
_b20243
SM_b20244: SM_b20244 - CDP-tyvelose-2-epimerase, at 248,740 to 249,861
_b20244
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1
2
3 at 246.792 kb on - strand, within SM_b20242 at 246.873 kb on - strand, within SM_b20242 at 247.074 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.096 kb on - strand, within SM_b20242 at 247.127 kb on + strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.170 kb on - strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.368 kb on - strand, within SM_b20242 at 247.432 kb on + strand, within SM_b20242 at 247.572 kb on - strand at 247.819 kb on - strand, within SM_b20243 at 247.894 kb on - strand, within SM_b20243 at 248.042 kb on + strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.158 kb on + strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.191 kb on - strand, within SM_b20243 at 248.194 kb on + strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.632 kb on - strand at 248.632 kb on - strand at 248.811 kb on - strand at 248.880 kb on + strand, within SM_b20244 at 249.119 kb on + strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.207 kb on - strand, within SM_b20244 at 249.262 kb on + strand, within SM_b20244 at 249.263 kb on - strand, within SM_b20244 at 249.269 kb on + strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.300 kb on - strand, within SM_b20244 at 249.306 kb on + strand, within SM_b20244 at 249.371 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 246,792 - SM_b20242 0.30 +0.5 246,873 - SM_b20242 0.37 -0.5 247,074 + SM_b20242 0.55 -0.3 247,095 + SM_b20242 0.56 +0.4 247,095 + SM_b20242 0.56 +0.0 247,096 - SM_b20242 0.56 -1.7 247,127 + SM_b20242 0.59 +0.4 247,128 - SM_b20242 0.59 -1.3 247,128 - SM_b20242 0.59 -0.8 247,170 - SM_b20242 0.63 -1.1 247,367 + SM_b20242 0.80 -0.4 247,367 + SM_b20242 0.80 +0.6 247,368 - SM_b20242 0.81 -1.4 247,432 + SM_b20242 0.86 -0.3 247,572 - +0.6 247,819 - SM_b20243 0.20 -0.6 247,894 - SM_b20243 0.26 -0.3 248,042 + SM_b20243 0.39 +0.2 248,043 - SM_b20243 0.39 -0.2 248,043 - SM_b20243 0.39 +0.2 248,043 - SM_b20243 0.39 -0.4 248,158 + SM_b20243 0.49 -0.3 248,161 - SM_b20243 0.49 -1.1 248,161 - SM_b20243 0.49 -0.7 248,191 - SM_b20243 0.52 +0.3 248,194 + SM_b20243 0.52 -0.6 248,627 - SM_b20243 0.90 -0.7 248,627 - SM_b20243 0.90 +0.0 248,627 - SM_b20243 0.90 -0.1 248,632 - -0.4 248,632 - +0.2 248,811 - +0.1 248,880 + SM_b20244 0.12 -1.1 249,119 + SM_b20244 0.34 -0.2 249,120 - SM_b20244 0.34 -0.6 249,120 - SM_b20244 0.34 +0.3 249,120 - SM_b20244 0.34 +0.6 249,207 - SM_b20244 0.42 -0.2 249,262 + SM_b20244 0.47 +0.2 249,263 - SM_b20244 0.47 +0.0 249,269 + SM_b20244 0.47 +0.5 249,270 - SM_b20244 0.47 -0.7 249,270 - SM_b20244 0.47 -0.6 249,270 - SM_b20244 0.47 -0.8 249,270 - SM_b20244 0.47 -0.6 249,300 - SM_b20244 0.50 -0.1 249,306 + SM_b20244 0.50 +0.1 249,371 + SM_b20244 0.56 +0.3 249,416 + SM_b20244 0.60 +2.8 249,416 + SM_b20244 0.60 +0.9
Or see this region's nucleotide sequence