Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24350

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24345 and RR42_RS24350 are separated by 219 nucleotidesRR42_RS24350 and RR42_RS24355 are separated by 242 nucleotides RR42_RS24345: RR42_RS24345 - membrane protein, at 790,869 to 791,981 _RS24345 RR42_RS24350: RR42_RS24350 - malyl-CoA thiolesterase, at 792,201 to 793,079 _RS24350 RR42_RS24355: RR42_RS24355 - hypothetical protein, at 793,322 to 793,957 _RS24355 Position (kb) 792 793 794Strain fitness (log2 ratio) -2 -1 0 1 2at 791.210 kb on - strand, within RR42_RS24345at 791.210 kb on - strand, within RR42_RS24345at 791.253 kb on + strand, within RR42_RS24345at 791.310 kb on + strand, within RR42_RS24345at 791.311 kb on - strand, within RR42_RS24345at 791.330 kb on - strand, within RR42_RS24345at 791.339 kb on - strand, within RR42_RS24345at 791.339 kb on - strand, within RR42_RS24345at 791.358 kb on - strand, within RR42_RS24345at 791.465 kb on + strand, within RR42_RS24345at 791.466 kb on - strand, within RR42_RS24345at 791.466 kb on - strand, within RR42_RS24345at 791.468 kb on + strand, within RR42_RS24345at 791.469 kb on - strand, within RR42_RS24345at 791.472 kb on + strand, within RR42_RS24345at 791.473 kb on - strand, within RR42_RS24345at 791.473 kb on - strand, within RR42_RS24345at 791.485 kb on + strand, within RR42_RS24345at 791.521 kb on + strand, within RR42_RS24345at 791.522 kb on - strand, within RR42_RS24345at 791.522 kb on - strand, within RR42_RS24345at 791.535 kb on - strand, within RR42_RS24345at 791.567 kb on + strand, within RR42_RS24345at 791.594 kb on + strand, within RR42_RS24345at 791.595 kb on - strand, within RR42_RS24345at 791.598 kb on + strand, within RR42_RS24345at 791.598 kb on + strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.667 kb on - strand, within RR42_RS24345at 791.671 kb on + strand, within RR42_RS24345at 791.671 kb on + strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.686 kb on - strand, within RR42_RS24345at 791.686 kb on - strand, within RR42_RS24345at 791.707 kb on - strand, within RR42_RS24345at 791.745 kb on + strand, within RR42_RS24345at 791.745 kb on + strand, within RR42_RS24345at 791.746 kb on - strand, within RR42_RS24345at 791.746 kb on - strand, within RR42_RS24345at 791.860 kb on - strand, within RR42_RS24345at 791.860 kb on - strand, within RR42_RS24345at 791.917 kb on - strandat 791.917 kb on - strandat 791.943 kb on - strandat 792.235 kb on - strandat 792.280 kb on + strandat 792.366 kb on - strand, within RR42_RS24350at 792.382 kb on - strand, within RR42_RS24350at 792.404 kb on - strand, within RR42_RS24350at 792.404 kb on - strand, within RR42_RS24350at 792.413 kb on + strand, within RR42_RS24350at 792.413 kb on + strand, within RR42_RS24350at 792.452 kb on - strand, within RR42_RS24350at 792.613 kb on + strand, within RR42_RS24350at 792.613 kb on + strand, within RR42_RS24350at 792.614 kb on - strand, within RR42_RS24350at 792.614 kb on - strand, within RR42_RS24350at 792.614 kb on - strand, within RR42_RS24350at 792.653 kb on + strand, within RR42_RS24350at 792.653 kb on + strand, within RR42_RS24350at 792.654 kb on - strand, within RR42_RS24350at 792.721 kb on + strand, within RR42_RS24350at 792.721 kb on + strand, within RR42_RS24350at 792.750 kb on + strand, within RR42_RS24350at 792.751 kb on - strand, within RR42_RS24350at 792.751 kb on - strand, within RR42_RS24350at 792.811 kb on + strand, within RR42_RS24350at 792.874 kb on + strand, within RR42_RS24350at 792.969 kb on - strand, within RR42_RS24350at 792.969 kb on - strand, within RR42_RS24350at 793.062 kb on - strandat 793.144 kb on + strandat 793.179 kb on + strandat 793.182 kb on + strandat 793.183 kb on - strandat 793.259 kb on - strandat 793.259 kb on - strandat 793.321 kb on + strandat 793.322 kb on - strandat 793.388 kb on - strand, within RR42_RS24355at 793.627 kb on + strand, within RR42_RS24355at 793.731 kb on + strand, within RR42_RS24355at 793.732 kb on - strand, within RR42_RS24355at 793.768 kb on - strand, within RR42_RS24355at 793.768 kb on - strand, within RR42_RS24355at 793.887 kb on + strand, within RR42_RS24355at 793.887 kb on + strand, within RR42_RS24355at 793.888 kb on - strand, within RR42_RS24355at 793.923 kb on + strandat 793.923 kb on + strandat 793.924 kb on - strandat 793.975 kb on + strandat 793.975 kb on + strandat 793.975 kb on + strandat 794.021 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
791,210 - RR42_RS24345 0.31 -0.5
791,210 - RR42_RS24345 0.31 -0.8
791,253 + RR42_RS24345 0.35 -0.4
791,310 + RR42_RS24345 0.40 +0.4
791,311 - RR42_RS24345 0.40 -1.0
791,330 - RR42_RS24345 0.41 -1.3
791,339 - RR42_RS24345 0.42 +1.2
791,339 - RR42_RS24345 0.42 -1.0
791,358 - RR42_RS24345 0.44 -1.0
791,465 + RR42_RS24345 0.54 +0.2
791,466 - RR42_RS24345 0.54 +0.5
791,466 - RR42_RS24345 0.54 +2.1
791,468 + RR42_RS24345 0.54 +0.4
791,469 - RR42_RS24345 0.54 -1.7
791,472 + RR42_RS24345 0.54 -0.4
791,473 - RR42_RS24345 0.54 -1.1
791,473 - RR42_RS24345 0.54 -0.2
791,485 + RR42_RS24345 0.55 +0.5
791,521 + RR42_RS24345 0.59 -0.3
791,522 - RR42_RS24345 0.59 -0.5
791,522 - RR42_RS24345 0.59 -0.2
791,535 - RR42_RS24345 0.60 +0.5
791,567 + RR42_RS24345 0.63 -0.6
791,594 + RR42_RS24345 0.65 -0.2
791,595 - RR42_RS24345 0.65 -0.5
791,598 + RR42_RS24345 0.65 -0.2
791,598 + RR42_RS24345 0.65 -0.5
791,599 - RR42_RS24345 0.66 +0.0
791,599 - RR42_RS24345 0.66 -0.1
791,599 - RR42_RS24345 0.66 +0.7
791,667 - RR42_RS24345 0.72 +0.2
791,671 + RR42_RS24345 0.72 +0.2
791,671 + RR42_RS24345 0.72 -0.7
791,672 - RR42_RS24345 0.72 -2.1
791,672 - RR42_RS24345 0.72 -0.7
791,672 - RR42_RS24345 0.72 -0.6
791,686 - RR42_RS24345 0.73 -1.7
791,686 - RR42_RS24345 0.73 -0.1
791,707 - RR42_RS24345 0.75 -0.5
791,745 + RR42_RS24345 0.79 -0.1
791,745 + RR42_RS24345 0.79 -0.6
791,746 - RR42_RS24345 0.79 +0.0
791,746 - RR42_RS24345 0.79 -1.9
791,860 - RR42_RS24345 0.89 -0.7
791,860 - RR42_RS24345 0.89 -0.4
791,917 - -0.9
791,917 - -0.5
791,943 - +0.4
792,235 - +1.1
792,280 + -0.5
792,366 - RR42_RS24350 0.19 -0.1
792,382 - RR42_RS24350 0.21 +0.1
792,404 - RR42_RS24350 0.23 +0.4
792,404 - RR42_RS24350 0.23 +1.6
792,413 + RR42_RS24350 0.24 +0.2
792,413 + RR42_RS24350 0.24 -0.5
792,452 - RR42_RS24350 0.29 +0.6
792,613 + RR42_RS24350 0.47 -0.3
792,613 + RR42_RS24350 0.47 -1.0
792,614 - RR42_RS24350 0.47 +1.4
792,614 - RR42_RS24350 0.47 +1.0
792,614 - RR42_RS24350 0.47 -0.1
792,653 + RR42_RS24350 0.51 +0.5
792,653 + RR42_RS24350 0.51 +0.2
792,654 - RR42_RS24350 0.52 -0.5
792,721 + RR42_RS24350 0.59 +1.1
792,721 + RR42_RS24350 0.59 -0.1
792,750 + RR42_RS24350 0.62 +0.9
792,751 - RR42_RS24350 0.63 +1.9
792,751 - RR42_RS24350 0.63 +1.4
792,811 + RR42_RS24350 0.69 -0.2
792,874 + RR42_RS24350 0.77 -1.1
792,969 - RR42_RS24350 0.87 +1.2
792,969 - RR42_RS24350 0.87 -2.2
793,062 - +1.4
793,144 + -0.7
793,179 + +0.4
793,182 + +0.3
793,183 - +1.1
793,259 - +0.4
793,259 - +0.1
793,321 + -0.2
793,322 - +0.1
793,388 - RR42_RS24355 0.10 -0.3
793,627 + RR42_RS24355 0.48 -0.8
793,731 + RR42_RS24355 0.64 -1.2
793,732 - RR42_RS24355 0.64 -0.9
793,768 - RR42_RS24355 0.70 +0.8
793,768 - RR42_RS24355 0.70 -0.2
793,887 + RR42_RS24355 0.89 -0.1
793,887 + RR42_RS24355 0.89 -0.1
793,888 - RR42_RS24355 0.89 +1.1
793,923 + +0.8
793,923 + +0.2
793,924 - -0.9
793,975 + -0.6
793,975 + +1.4
793,975 + +0.8
794,021 + +0.3

Or see this region's nucleotide sequence