Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04520 and RR42_RS04525 are separated by 200 nucleotides RR42_RS04525 and RR42_RS04530 are separated by 284 nucleotides RR42_RS04530 and RR42_RS04535 are separated by 70 nucleotides
RR42_RS04520: RR42_RS04520 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,009,490 to 1,010,485
_RS04520
RR42_RS04525: RR42_RS04525 - hypothetical protein, at 1,010,686 to 1,011,048
_RS04525
RR42_RS04530: RR42_RS04530 - pyrimidine permease, at 1,011,333 to 1,012,649
_RS04530
RR42_RS04535: RR42_RS04535 - cysteine synthase, at 1,012,720 to 1,013,622
_RS04535
Position (kb) 1011
1012
1013 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1010.505 kb on + strand at 1010.505 kb on + strand at 1010.506 kb on - strand at 1010.605 kb on + strand at 1010.606 kb on - strand at 1010.658 kb on - strand at 1010.772 kb on + strand, within RR42_RS04525 at 1011.046 kb on + strand at 1011.047 kb on - strand at 1011.088 kb on + strand at 1011.176 kb on - strand at 1011.296 kb on + strand at 1011.441 kb on - strand at 1011.455 kb on - strand at 1011.579 kb on + strand, within RR42_RS04530 at 1011.579 kb on + strand, within RR42_RS04530 at 1011.580 kb on - strand, within RR42_RS04530 at 1011.580 kb on - strand, within RR42_RS04530 at 1011.699 kb on + strand, within RR42_RS04530 at 1011.700 kb on - strand, within RR42_RS04530 at 1011.700 kb on - strand, within RR42_RS04530 at 1011.700 kb on - strand, within RR42_RS04530 at 1011.700 kb on - strand, within RR42_RS04530 at 1011.848 kb on + strand, within RR42_RS04530 at 1011.929 kb on - strand, within RR42_RS04530 at 1011.964 kb on - strand, within RR42_RS04530 at 1011.964 kb on - strand, within RR42_RS04530 at 1012.173 kb on + strand, within RR42_RS04530 at 1012.174 kb on - strand, within RR42_RS04530 at 1012.174 kb on - strand, within RR42_RS04530 at 1012.251 kb on + strand, within RR42_RS04530 at 1012.251 kb on + strand, within RR42_RS04530 at 1012.252 kb on - strand, within RR42_RS04530 at 1012.252 kb on - strand, within RR42_RS04530 at 1012.252 kb on - strand, within RR42_RS04530 at 1012.442 kb on + strand, within RR42_RS04530 at 1012.686 kb on + strand at 1012.686 kb on + strand at 1012.686 kb on + strand at 1012.687 kb on - strand at 1012.687 kb on - strand at 1012.687 kb on - strand at 1012.727 kb on - strand at 1012.727 kb on - strand at 1012.814 kb on + strand, within RR42_RS04535 at 1012.814 kb on + strand, within RR42_RS04535 at 1012.814 kb on + strand, within RR42_RS04535 at 1012.815 kb on - strand, within RR42_RS04535 at 1012.815 kb on - strand, within RR42_RS04535 at 1012.923 kb on + strand, within RR42_RS04535 at 1013.384 kb on - strand, within RR42_RS04535 at 1013.593 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,010,505 + -0.7 1,010,505 + +0.2 1,010,506 - -0.3 1,010,605 + +0.3 1,010,606 - -0.1 1,010,658 - +1.1 1,010,772 + RR42_RS04525 0.24 +1.2 1,011,046 + -0.2 1,011,047 - +0.2 1,011,088 + -0.7 1,011,176 - -0.8 1,011,296 + -0.9 1,011,441 - -0.4 1,011,455 - +0.3 1,011,579 + RR42_RS04530 0.19 +0.4 1,011,579 + RR42_RS04530 0.19 -0.4 1,011,580 - RR42_RS04530 0.19 -1.4 1,011,580 - RR42_RS04530 0.19 -0.3 1,011,699 + RR42_RS04530 0.28 -0.2 1,011,700 - RR42_RS04530 0.28 +0.1 1,011,700 - RR42_RS04530 0.28 +0.6 1,011,700 - RR42_RS04530 0.28 -0.5 1,011,700 - RR42_RS04530 0.28 +0.2 1,011,848 + RR42_RS04530 0.39 +0.6 1,011,929 - RR42_RS04530 0.45 -1.3 1,011,964 - RR42_RS04530 0.48 +0.1 1,011,964 - RR42_RS04530 0.48 -0.2 1,012,173 + RR42_RS04530 0.64 +0.2 1,012,174 - RR42_RS04530 0.64 +0.6 1,012,174 - RR42_RS04530 0.64 -0.5 1,012,251 + RR42_RS04530 0.70 -0.0 1,012,251 + RR42_RS04530 0.70 +0.1 1,012,252 - RR42_RS04530 0.70 +0.6 1,012,252 - RR42_RS04530 0.70 -0.3 1,012,252 - RR42_RS04530 0.70 +0.4 1,012,442 + RR42_RS04530 0.84 -0.4 1,012,686 + -0.1 1,012,686 + +0.1 1,012,686 + +0.2 1,012,687 - +0.1 1,012,687 - +0.2 1,012,687 - -0.0 1,012,727 - -3.4 1,012,727 - -3.9 1,012,814 + RR42_RS04535 0.10 -0.5 1,012,814 + RR42_RS04535 0.10 -3.1 1,012,814 + RR42_RS04535 0.10 +0.1 1,012,815 - RR42_RS04535 0.11 +0.1 1,012,815 - RR42_RS04535 0.11 -4.3 1,012,923 + RR42_RS04535 0.22 -2.2 1,013,384 - RR42_RS04535 0.74 -3.6 1,013,593 + -0.5
Or see this region's nucleotide sequence