Experiment: R2A with Nickel (II) chloride 0.15625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00305 and LRK54_RS00310 are separated by 470 nucleotides LRK54_RS00310 and LRK54_RS00315 are separated by 67 nucleotides
LRK54_RS00305: LRK54_RS00305 - asparagine synthase B, at 68,733 to 70,400
_RS00305
LRK54_RS00310: LRK54_RS00310 - STAS/SEC14 domain-containing protein, at 70,871 to 71,236
_RS00310
LRK54_RS00315: LRK54_RS00315 - single-stranded-DNA-specific exonuclease RecJ, at 71,304 to 73,016
_RS00315
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.961 kb on + strand, within LRK54_RS00305 at 69.962 kb on - strand, within LRK54_RS00305 at 69.962 kb on - strand, within LRK54_RS00305 at 69.962 kb on - strand, within LRK54_RS00305 at 69.962 kb on - strand, within LRK54_RS00305 at 70.001 kb on - strand, within LRK54_RS00305 at 70.001 kb on - strand, within LRK54_RS00305 at 70.081 kb on + strand, within LRK54_RS00305 at 70.081 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.126 kb on + strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.127 kb on - strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.159 kb on + strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.160 kb on - strand, within LRK54_RS00305 at 70.573 kb on + strand at 70.574 kb on - strand at 70.574 kb on - strand at 70.601 kb on + strand at 70.601 kb on + strand at 70.602 kb on - strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.616 kb on + strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.617 kb on - strand at 70.737 kb on + strand at 70.738 kb on - strand at 70.753 kb on + strand at 70.753 kb on + strand at 70.753 kb on + strand at 70.754 kb on - strand at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.094 kb on + strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.095 kb on - strand, within LRK54_RS00310 at 71.096 kb on - strand, within LRK54_RS00310 at 71.160 kb on + strand, within LRK54_RS00310 at 71.160 kb on + strand, within LRK54_RS00310 at 71.160 kb on + strand, within LRK54_RS00310 at 71.160 kb on + strand, within LRK54_RS00310 at 71.160 kb on + strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.161 kb on - strand, within LRK54_RS00310 at 71.377 kb on + strand at 71.377 kb on + strand at 71.377 kb on + strand at 71.377 kb on + strand at 71.377 kb on + strand at 71.378 kb on - strand at 71.378 kb on - strand at 71.378 kb on - strand at 71.378 kb on - strand at 71.378 kb on - strand at 71.416 kb on + strand at 71.416 kb on + strand at 71.416 kb on + strand at 71.416 kb on + strand at 71.417 kb on - strand at 71.417 kb on - strand at 71.417 kb on - strand at 71.417 kb on - strand at 71.417 kb on - strand at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.629 kb on + strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315 at 71.630 kb on - strand, within LRK54_RS00315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.15625 mM remove 69,961 + LRK54_RS00305 0.74 -1.1 69,961 + LRK54_RS00305 0.74 +1.4 69,961 + LRK54_RS00305 0.74 -0.2 69,961 + LRK54_RS00305 0.74 +2.4 69,961 + LRK54_RS00305 0.74 +1.0 69,961 + LRK54_RS00305 0.74 +0.7 69,961 + LRK54_RS00305 0.74 +0.6 69,961 + LRK54_RS00305 0.74 -0.1 69,962 - LRK54_RS00305 0.74 +0.4 69,962 - LRK54_RS00305 0.74 +1.0 69,962 - LRK54_RS00305 0.74 -0.2 69,962 - LRK54_RS00305 0.74 -1.1 70,001 - LRK54_RS00305 0.76 +0.0 70,001 - LRK54_RS00305 0.76 +0.0 70,081 + LRK54_RS00305 0.81 +0.8 70,081 + LRK54_RS00305 0.81 -1.2 70,126 + LRK54_RS00305 0.84 +0.4 70,126 + LRK54_RS00305 0.84 +0.8 70,126 + LRK54_RS00305 0.84 +0.3 70,126 + LRK54_RS00305 0.84 -0.7 70,126 + LRK54_RS00305 0.84 +0.9 70,126 + LRK54_RS00305 0.84 +0.0 70,126 + LRK54_RS00305 0.84 +3.9 70,127 - LRK54_RS00305 0.84 -0.5 70,127 - LRK54_RS00305 0.84 +0.0 70,127 - LRK54_RS00305 0.84 +0.5 70,127 - LRK54_RS00305 0.84 -0.8 70,127 - LRK54_RS00305 0.84 +0.2 70,127 - LRK54_RS00305 0.84 -2.0 70,127 - LRK54_RS00305 0.84 +0.9 70,127 - LRK54_RS00305 0.84 -1.3 70,127 - LRK54_RS00305 0.84 +1.0 70,127 - LRK54_RS00305 0.84 -0.2 70,127 - LRK54_RS00305 0.84 +2.4 70,127 - LRK54_RS00305 0.84 +1.4 70,159 + LRK54_RS00305 0.85 -0.1 70,159 + LRK54_RS00305 0.85 +1.0 70,159 + LRK54_RS00305 0.85 +1.0 70,159 + LRK54_RS00305 0.85 -1.5 70,159 + LRK54_RS00305 0.85 +1.4 70,159 + LRK54_RS00305 0.85 -0.2 70,159 + LRK54_RS00305 0.85 +0.2 70,159 + LRK54_RS00305 0.85 -0.3 70,160 - LRK54_RS00305 0.86 -0.2 70,160 - LRK54_RS00305 0.86 -0.5 70,160 - LRK54_RS00305 0.86 +0.4 70,160 - LRK54_RS00305 0.86 -2.5 70,160 - LRK54_RS00305 0.86 -0.2 70,160 - LRK54_RS00305 0.86 -1.2 70,160 - LRK54_RS00305 0.86 -0.2 70,160 - LRK54_RS00305 0.86 -0.3 70,160 - LRK54_RS00305 0.86 -0.2 70,573 + +0.0 70,574 - +0.4 70,574 - -0.4 70,601 + -2.0 70,601 + -1.7 70,602 - +0.8 70,616 + -1.3 70,616 + +0.8 70,616 + -1.6 70,616 + +0.6 70,616 + -0.2 70,616 + +0.0 70,616 + -0.1 70,616 + +0.4 70,617 - -0.4 70,617 - -0.6 70,617 - +0.5 70,617 - +0.5 70,617 - +1.1 70,617 - -0.8 70,617 - -1.8 70,617 - -1.1 70,737 + -0.2 70,738 - +0.6 70,753 + +0.2 70,753 + +0.1 70,753 + -1.1 70,754 - +0.6 71,094 + LRK54_RS00310 0.61 +0.5 71,094 + LRK54_RS00310 0.61 +0.1 71,094 + LRK54_RS00310 0.61 +1.4 71,094 + LRK54_RS00310 0.61 -0.1 71,094 + LRK54_RS00310 0.61 -0.9 71,094 + LRK54_RS00310 0.61 -1.0 71,094 + LRK54_RS00310 0.61 -0.3 71,094 + LRK54_RS00310 0.61 -0.7 71,094 + LRK54_RS00310 0.61 -0.4 71,094 + LRK54_RS00310 0.61 +0.8 71,094 + LRK54_RS00310 0.61 +0.8 71,094 + LRK54_RS00310 0.61 +1.0 71,094 + LRK54_RS00310 0.61 -1.1 71,094 + LRK54_RS00310 0.61 -0.2 71,094 + LRK54_RS00310 0.61 +0.0 71,094 + LRK54_RS00310 0.61 -0.6 71,094 + LRK54_RS00310 0.61 +0.6 71,094 + LRK54_RS00310 0.61 -0.6 71,094 + LRK54_RS00310 0.61 +1.8 71,094 + LRK54_RS00310 0.61 -1.8 71,094 + LRK54_RS00310 0.61 -1.9 71,094 + LRK54_RS00310 0.61 +0.4 71,094 + LRK54_RS00310 0.61 -0.1 71,094 + LRK54_RS00310 0.61 -0.8 71,094 + LRK54_RS00310 0.61 -2.2 71,094 + LRK54_RS00310 0.61 -0.4 71,094 + LRK54_RS00310 0.61 -0.2 71,094 + LRK54_RS00310 0.61 +0.6 71,094 + LRK54_RS00310 0.61 -0.5 71,094 + LRK54_RS00310 0.61 -0.3 71,094 + LRK54_RS00310 0.61 -1.1 71,094 + LRK54_RS00310 0.61 +0.8 71,094 + LRK54_RS00310 0.61 +0.0 71,094 + LRK54_RS00310 0.61 +1.4 71,094 + LRK54_RS00310 0.61 +1.1 71,094 + LRK54_RS00310 0.61 -1.1 71,094 + LRK54_RS00310 0.61 -1.4 71,094 + LRK54_RS00310 0.61 +0.5 71,094 + LRK54_RS00310 0.61 +0.2 71,094 + LRK54_RS00310 0.61 -0.6 71,094 + LRK54_RS00310 0.61 -0.3 71,094 + LRK54_RS00310 0.61 +0.6 71,094 + LRK54_RS00310 0.61 -0.3 71,095 - LRK54_RS00310 0.61 +0.0 71,095 - LRK54_RS00310 0.61 +0.1 71,095 - LRK54_RS00310 0.61 -1.2 71,095 - LRK54_RS00310 0.61 -0.8 71,095 - LRK54_RS00310 0.61 +0.9 71,095 - LRK54_RS00310 0.61 +0.5 71,095 - LRK54_RS00310 0.61 -0.0 71,095 - LRK54_RS00310 0.61 +0.2 71,095 - LRK54_RS00310 0.61 -0.6 71,095 - LRK54_RS00310 0.61 +0.2 71,095 - LRK54_RS00310 0.61 -1.6 71,095 - LRK54_RS00310 0.61 -0.9 71,095 - LRK54_RS00310 0.61 -0.4 71,095 - LRK54_RS00310 0.61 -0.3 71,095 - LRK54_RS00310 0.61 -0.3 71,095 - LRK54_RS00310 0.61 -0.5 71,095 - LRK54_RS00310 0.61 -1.6 71,095 - LRK54_RS00310 0.61 +0.4 71,095 - LRK54_RS00310 0.61 -1.0 71,095 - LRK54_RS00310 0.61 -0.1 71,095 - LRK54_RS00310 0.61 +0.7 71,095 - LRK54_RS00310 0.61 +0.3 71,095 - LRK54_RS00310 0.61 +1.1 71,095 - LRK54_RS00310 0.61 +0.8 71,095 - LRK54_RS00310 0.61 -0.4 71,095 - LRK54_RS00310 0.61 +0.4 71,095 - LRK54_RS00310 0.61 +0.0 71,095 - LRK54_RS00310 0.61 -0.1 71,095 - LRK54_RS00310 0.61 +2.4 71,095 - LRK54_RS00310 0.61 +2.4 71,095 - LRK54_RS00310 0.61 -2.0 71,095 - LRK54_RS00310 0.61 -2.3 71,095 - LRK54_RS00310 0.61 -0.3 71,095 - LRK54_RS00310 0.61 -0.9 71,095 - LRK54_RS00310 0.61 +0.9 71,095 - LRK54_RS00310 0.61 +0.0 71,095 - LRK54_RS00310 0.61 +1.3 71,096 - LRK54_RS00310 0.61 -0.1 71,160 + LRK54_RS00310 0.79 -0.1 71,160 + LRK54_RS00310 0.79 -1.7 71,160 + LRK54_RS00310 0.79 +0.9 71,160 + LRK54_RS00310 0.79 -0.2 71,160 + LRK54_RS00310 0.79 -0.1 71,161 - LRK54_RS00310 0.79 +0.1 71,161 - LRK54_RS00310 0.79 -0.2 71,161 - LRK54_RS00310 0.79 -0.3 71,161 - LRK54_RS00310 0.79 +1.6 71,161 - LRK54_RS00310 0.79 -0.4 71,161 - LRK54_RS00310 0.79 -0.1 71,161 - LRK54_RS00310 0.79 +0.2 71,161 - LRK54_RS00310 0.79 +0.5 71,161 - LRK54_RS00310 0.79 -0.3 71,377 + -0.4 71,377 + -0.7 71,377 + -0.5 71,377 + +1.4 71,377 + +0.2 71,378 - +1.4 71,378 - -2.3 71,378 - -0.3 71,378 - -1.0 71,378 - +0.8 71,416 + -2.6 71,416 + -0.4 71,416 + +0.2 71,416 + -2.0 71,417 - -1.1 71,417 - +0.0 71,417 - -1.0 71,417 - -1.6 71,417 - -1.0 71,629 + LRK54_RS00315 0.19 -0.3 71,629 + LRK54_RS00315 0.19 -1.3 71,629 + LRK54_RS00315 0.19 +0.2 71,629 + LRK54_RS00315 0.19 -0.4 71,629 + LRK54_RS00315 0.19 +1.0 71,629 + LRK54_RS00315 0.19 -1.1 71,629 + LRK54_RS00315 0.19 -0.6 71,629 + LRK54_RS00315 0.19 +0.2 71,629 + LRK54_RS00315 0.19 -1.9 71,629 + LRK54_RS00315 0.19 +0.1 71,629 + LRK54_RS00315 0.19 -1.1 71,629 + LRK54_RS00315 0.19 -1.7 71,630 - LRK54_RS00315 0.19 -0.8 71,630 - LRK54_RS00315 0.19 -0.6 71,630 - LRK54_RS00315 0.19 +0.8 71,630 - LRK54_RS00315 0.19 -1.6 71,630 - LRK54_RS00315 0.19 -0.2 71,630 - LRK54_RS00315 0.19 -0.9
Or see this region's nucleotide sequence