Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21705

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21700 and CA265_RS21705 are separated by 341 nucleotidesCA265_RS21705 and CA265_RS21710 are separated by 12 nucleotides CA265_RS21700: CA265_RS21700 - two-component sensor histidine kinase, at 5,337,468 to 5,338,493 _RS21700 CA265_RS21705: CA265_RS21705 - phosphate transport regulator, at 5,338,835 to 5,339,482 _RS21705 CA265_RS21710: CA265_RS21710 - anion permease, at 5,339,495 to 5,340,505 _RS21710 Position (kb) 5338 5339 5340Strain fitness (log2 ratio) -2 -1 0 1at 5337.904 kb on + strand, within CA265_RS21700at 5337.950 kb on + strand, within CA265_RS21700at 5338.003 kb on + strand, within CA265_RS21700at 5338.025 kb on + strand, within CA265_RS21700at 5338.124 kb on + strand, within CA265_RS21700at 5338.124 kb on + strand, within CA265_RS21700at 5338.128 kb on + strand, within CA265_RS21700at 5338.130 kb on + strand, within CA265_RS21700at 5338.189 kb on + strand, within CA265_RS21700at 5338.205 kb on + strand, within CA265_RS21700at 5338.387 kb on + strand, within CA265_RS21700at 5338.512 kb on + strandat 5338.540 kb on - strandat 5338.611 kb on + strandat 5338.672 kb on - strandat 5338.692 kb on - strandat 5338.705 kb on - strandat 5338.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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5,337,904 + CA265_RS21700 0.42 -1.4
5,337,950 + CA265_RS21700 0.47 +0.1
5,338,003 + CA265_RS21700 0.52 +0.3
5,338,025 + CA265_RS21700 0.54 -1.2
5,338,124 + CA265_RS21700 0.64 -0.9
5,338,124 + CA265_RS21700 0.64 -1.6
5,338,128 + CA265_RS21700 0.64 -1.7
5,338,130 + CA265_RS21700 0.65 +0.0
5,338,189 + CA265_RS21700 0.70 +0.8
5,338,205 + CA265_RS21700 0.72 -1.1
5,338,387 + CA265_RS21700 0.90 +0.3
5,338,512 + -2.4
5,338,540 - -0.6
5,338,611 + -0.1
5,338,672 - +0.6
5,338,692 - +0.2
5,338,705 - +0.1
5,338,753 - -0.7

Or see this region's nucleotide sequence