Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02430

Experiment: D-Trehalose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS02420 and CA265_RS02425 are separated by 92 nucleotidesCA265_RS02425 and CA265_RS02430 are separated by 6 nucleotidesCA265_RS02430 and CA265_RS02435 are separated by 50 nucleotidesCA265_RS02435 and CA265_RS02440 are separated by 132 nucleotides CA265_RS02420: CA265_RS02420 - hypothetical protein, at 598,504 to 600,921 _RS02420 CA265_RS02425: CA265_RS02425 - GTP cyclohydrolase, at 601,014 to 601,304 _RS02425 CA265_RS02430: CA265_RS02430 - ABC transporter ATPase, at 601,311 to 601,790 _RS02430 CA265_RS02435: CA265_RS02435 - hypothetical protein, at 601,841 to 602,317 _RS02435 CA265_RS02440: CA265_RS02440 - TldD protein, at 602,450 to 604,087 _RS02440 Position (kb) 601 602Strain fitness (log2 ratio) -2 -1 0 1 2 3at 600.423 kb on + strand, within CA265_RS02420at 600.424 kb on - strand, within CA265_RS02420at 600.454 kb on + strand, within CA265_RS02420at 600.510 kb on + strand, within CA265_RS02420at 600.525 kb on - strand, within CA265_RS02420at 600.532 kb on - strand, within CA265_RS02420at 600.580 kb on - strand, within CA265_RS02420at 600.588 kb on + strand, within CA265_RS02420at 600.589 kb on - strand, within CA265_RS02420at 600.596 kb on - strand, within CA265_RS02420at 600.596 kb on - strand, within CA265_RS02420at 600.601 kb on - strand, within CA265_RS02420at 600.628 kb on + strand, within CA265_RS02420at 600.629 kb on - strand, within CA265_RS02420at 600.658 kb on - strand, within CA265_RS02420at 600.676 kb on - strand, within CA265_RS02420at 600.676 kb on - strand, within CA265_RS02420at 600.697 kb on + strandat 600.830 kb on + strandat 600.831 kb on - strandat 600.883 kb on - strandat 600.916 kb on - strandat 600.940 kb on - strandat 600.940 kb on - strandat 600.983 kb on - strandat 600.987 kb on + strandat 600.992 kb on + strandat 600.992 kb on + strandat 600.992 kb on + strandat 600.993 kb on - strandat 600.993 kb on - strandat 600.993 kb on - strandat 601.059 kb on + strand, within CA265_RS02425at 601.060 kb on - strand, within CA265_RS02425at 601.211 kb on + strand, within CA265_RS02425at 601.251 kb on - strand, within CA265_RS02425at 601.283 kb on - strandat 601.287 kb on - strandat 601.308 kb on + strandat 601.308 kb on + strandat 601.317 kb on + strandat 601.401 kb on - strand, within CA265_RS02430at 601.436 kb on + strand, within CA265_RS02430at 601.436 kb on + strand, within CA265_RS02430at 601.439 kb on + strand, within CA265_RS02430at 601.440 kb on - strand, within CA265_RS02430at 601.491 kb on + strand, within CA265_RS02430at 601.498 kb on + strand, within CA265_RS02430at 601.535 kb on - strand, within CA265_RS02430at 601.710 kb on + strand, within CA265_RS02430at 601.731 kb on - strand, within CA265_RS02430at 601.737 kb on - strand, within CA265_RS02430at 601.877 kb on - strandat 601.899 kb on + strand, within CA265_RS02435at 601.899 kb on + strand, within CA265_RS02435at 601.976 kb on - strand, within CA265_RS02435at 602.007 kb on - strand, within CA265_RS02435at 602.043 kb on - strand, within CA265_RS02435at 602.057 kb on - strand, within CA265_RS02435at 602.087 kb on - strand, within CA265_RS02435at 602.087 kb on - strand, within CA265_RS02435at 602.129 kb on - strand, within CA265_RS02435at 602.129 kb on - strand, within CA265_RS02435at 602.144 kb on + strand, within CA265_RS02435at 602.262 kb on + strand, within CA265_RS02435at 602.292 kb on + strandat 602.423 kb on - strandat 602.437 kb on - strandat 602.468 kb on - strandat 602.476 kb on - strandat 602.484 kb on + strandat 602.559 kb on - strandat 602.561 kb on - strandat 602.601 kb on + strandat 602.602 kb on - strandat 602.630 kb on + strand, within CA265_RS02440at 602.686 kb on + strand, within CA265_RS02440at 602.686 kb on + strand, within CA265_RS02440at 602.686 kb on + strand, within CA265_RS02440at 602.699 kb on - strand, within CA265_RS02440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
remove
600,423 + CA265_RS02420 0.79 -0.1
600,424 - CA265_RS02420 0.79 +0.3
600,454 + CA265_RS02420 0.81 +0.3
600,510 + CA265_RS02420 0.83 -0.3
600,525 - CA265_RS02420 0.84 -1.1
600,532 - CA265_RS02420 0.84 -0.1
600,580 - CA265_RS02420 0.86 +0.4
600,588 + CA265_RS02420 0.86 -0.7
600,589 - CA265_RS02420 0.86 +0.2
600,596 - CA265_RS02420 0.87 -0.2
600,596 - CA265_RS02420 0.87 +0.5
600,601 - CA265_RS02420 0.87 -0.4
600,628 + CA265_RS02420 0.88 -0.0
600,629 - CA265_RS02420 0.88 +0.2
600,658 - CA265_RS02420 0.89 -1.2
600,676 - CA265_RS02420 0.90 +0.6
600,676 - CA265_RS02420 0.90 +0.7
600,697 + -0.0
600,830 + -0.1
600,831 - +0.3
600,883 - -0.2
600,916 - +0.2
600,940 - +0.7
600,940 - -0.4
600,983 - -0.3
600,987 + +1.6
600,992 + +0.6
600,992 + +0.3
600,992 + +0.3
600,993 - +0.2
600,993 - +0.5
600,993 - -0.2
601,059 + CA265_RS02425 0.15 +0.3
601,060 - CA265_RS02425 0.16 -0.4
601,211 + CA265_RS02425 0.68 -0.9
601,251 - CA265_RS02425 0.81 +0.5
601,283 - -0.2
601,287 - -0.4
601,308 + +0.0
601,308 + -0.2
601,317 + -0.8
601,401 - CA265_RS02430 0.19 -0.4
601,436 + CA265_RS02430 0.26 -0.2
601,436 + CA265_RS02430 0.26 -1.0
601,439 + CA265_RS02430 0.27 -0.8
601,440 - CA265_RS02430 0.27 +3.2
601,491 + CA265_RS02430 0.38 -0.3
601,498 + CA265_RS02430 0.39 -0.2
601,535 - CA265_RS02430 0.47 -0.2
601,710 + CA265_RS02430 0.83 -1.2
601,731 - CA265_RS02430 0.88 -0.5
601,737 - CA265_RS02430 0.89 -0.7
601,877 - -0.1
601,899 + CA265_RS02435 0.12 -0.7
601,899 + CA265_RS02435 0.12 -0.6
601,976 - CA265_RS02435 0.28 +0.2
602,007 - CA265_RS02435 0.35 -2.3
602,043 - CA265_RS02435 0.42 +1.6
602,057 - CA265_RS02435 0.45 +0.6
602,087 - CA265_RS02435 0.52 +1.0
602,087 - CA265_RS02435 0.52 -0.1
602,129 - CA265_RS02435 0.60 +0.3
602,129 - CA265_RS02435 0.60 -0.6
602,144 + CA265_RS02435 0.64 -0.7
602,262 + CA265_RS02435 0.88 -1.2
602,292 + -0.4
602,423 - -0.3
602,437 - +0.3
602,468 - +0.9
602,476 - +0.9
602,484 + -0.4
602,559 - -0.6
602,561 - -0.1
602,601 + -0.7
602,602 - -1.2
602,630 + CA265_RS02440 0.11 +0.6
602,686 + CA265_RS02440 0.14 -0.2
602,686 + CA265_RS02440 0.14 -1.6
602,686 + CA265_RS02440 0.14 +0.1
602,699 - CA265_RS02440 0.15 +0.4

Or see this region's nucleotide sequence