Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35880 and BPHYT_RS35885 are separated by 602 nucleotides BPHYT_RS35885 and BPHYT_RS35890 are separated by 350 nucleotides
BPHYT_RS35880: BPHYT_RS35880 - response regulator receiver protein, at 11,145 to 11,516
_RS35880
BPHYT_RS35885: BPHYT_RS35885 - hypothetical protein, at 12,119 to 12,403
_RS35885
BPHYT_RS35890: BPHYT_RS35890 - hypothetical protein, at 12,754 to 13,743
_RS35890
Position (kb)
12
13 Strain fitness (log2 ratio)
-1
0
1 at 11.129 kb on + strand at 11.130 kb on - strand at 11.154 kb on - strand at 11.236 kb on + strand, within BPHYT_RS35880 at 11.237 kb on - strand, within BPHYT_RS35880 at 11.237 kb on - strand, within BPHYT_RS35880 at 11.244 kb on + strand, within BPHYT_RS35880 at 11.244 kb on + strand, within BPHYT_RS35880 at 11.245 kb on - strand, within BPHYT_RS35880 at 11.388 kb on - strand, within BPHYT_RS35880 at 11.388 kb on - strand, within BPHYT_RS35880 at 11.588 kb on + strand at 11.634 kb on + strand at 11.634 kb on + strand at 11.635 kb on - strand at 11.705 kb on - strand at 11.805 kb on - strand at 11.863 kb on - strand at 12.150 kb on - strand, within BPHYT_RS35885 at 12.244 kb on + strand, within BPHYT_RS35885 at 12.319 kb on - strand, within BPHYT_RS35885 at 12.463 kb on + strand at 12.595 kb on + strand at 12.597 kb on + strand at 12.597 kb on + strand at 12.597 kb on + strand at 12.598 kb on - strand at 12.616 kb on - strand at 12.681 kb on + strand at 12.685 kb on + strand at 12.685 kb on + strand at 12.685 kb on + strand at 12.686 kb on - strand at 12.686 kb on - strand at 12.692 kb on + strand at 12.756 kb on - strand at 12.801 kb on + strand at 12.802 kb on - strand at 12.809 kb on + strand at 12.889 kb on + strand, within BPHYT_RS35890 at 12.889 kb on + strand, within BPHYT_RS35890 at 12.890 kb on - strand, within BPHYT_RS35890 at 12.974 kb on - strand, within BPHYT_RS35890 at 13.105 kb on - strand, within BPHYT_RS35890 at 13.136 kb on + strand, within BPHYT_RS35890 at 13.136 kb on + strand, within BPHYT_RS35890 at 13.137 kb on - strand, within BPHYT_RS35890 at 13.187 kb on + strand, within BPHYT_RS35890 at 13.282 kb on + strand, within BPHYT_RS35890 at 13.369 kb on + strand, within BPHYT_RS35890 at 13.370 kb on - strand, within BPHYT_RS35890
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 11,129 + +0.3 11,130 - +0.1 11,154 - +0.2 11,236 + BPHYT_RS35880 0.24 -0.7 11,237 - BPHYT_RS35880 0.25 -0.7 11,237 - BPHYT_RS35880 0.25 +0.2 11,244 + BPHYT_RS35880 0.27 -0.1 11,244 + BPHYT_RS35880 0.27 -0.3 11,245 - BPHYT_RS35880 0.27 +0.1 11,388 - BPHYT_RS35880 0.65 +1.3 11,388 - BPHYT_RS35880 0.65 -0.2 11,588 + +0.5 11,634 + +0.0 11,634 + +0.2 11,635 - -0.9 11,705 - -0.3 11,805 - -0.7 11,863 - -0.0 12,150 - BPHYT_RS35885 0.11 -1.2 12,244 + BPHYT_RS35885 0.44 -0.6 12,319 - BPHYT_RS35885 0.70 -0.9 12,463 + -0.4 12,595 + -0.4 12,597 + +0.4 12,597 + -0.2 12,597 + +1.0 12,598 - +0.1 12,616 - -0.1 12,681 + +0.5 12,685 + +0.2 12,685 + -0.5 12,685 + -0.8 12,686 - -1.3 12,686 - +0.2 12,692 + -0.1 12,756 - +0.1 12,801 + +0.2 12,802 - +0.0 12,809 + +0.2 12,889 + BPHYT_RS35890 0.14 -0.4 12,889 + BPHYT_RS35890 0.14 -0.3 12,890 - BPHYT_RS35890 0.14 +1.1 12,974 - BPHYT_RS35890 0.22 +0.0 13,105 - BPHYT_RS35890 0.35 +0.2 13,136 + BPHYT_RS35890 0.39 -0.0 13,136 + BPHYT_RS35890 0.39 -0.0 13,137 - BPHYT_RS35890 0.39 -0.3 13,187 + BPHYT_RS35890 0.44 +0.3 13,282 + BPHYT_RS35890 0.53 +0.3 13,369 + BPHYT_RS35890 0.62 +0.7 13,370 - BPHYT_RS35890 0.62 +0.1
Or see this region's nucleotide sequence