Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35885

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35880 and BPHYT_RS35885 are separated by 602 nucleotidesBPHYT_RS35885 and BPHYT_RS35890 are separated by 350 nucleotides BPHYT_RS35880: BPHYT_RS35880 - response regulator receiver protein, at 11,145 to 11,516 _RS35880 BPHYT_RS35885: BPHYT_RS35885 - hypothetical protein, at 12,119 to 12,403 _RS35885 BPHYT_RS35890: BPHYT_RS35890 - hypothetical protein, at 12,754 to 13,743 _RS35890 Position (kb) 12 13Strain fitness (log2 ratio) -1 0 1at 11.129 kb on + strandat 11.130 kb on - strandat 11.154 kb on - strandat 11.236 kb on + strand, within BPHYT_RS35880at 11.237 kb on - strand, within BPHYT_RS35880at 11.237 kb on - strand, within BPHYT_RS35880at 11.244 kb on + strand, within BPHYT_RS35880at 11.244 kb on + strand, within BPHYT_RS35880at 11.245 kb on - strand, within BPHYT_RS35880at 11.388 kb on - strand, within BPHYT_RS35880at 11.388 kb on - strand, within BPHYT_RS35880at 11.588 kb on + strandat 11.634 kb on + strandat 11.634 kb on + strandat 11.635 kb on - strandat 11.705 kb on - strandat 11.805 kb on - strandat 11.863 kb on - strandat 12.150 kb on - strand, within BPHYT_RS35885at 12.244 kb on + strand, within BPHYT_RS35885at 12.319 kb on - strand, within BPHYT_RS35885at 12.463 kb on + strandat 12.595 kb on + strandat 12.597 kb on + strandat 12.597 kb on + strandat 12.597 kb on + strandat 12.598 kb on - strandat 12.616 kb on - strandat 12.681 kb on + strandat 12.685 kb on + strandat 12.685 kb on + strandat 12.685 kb on + strandat 12.686 kb on - strandat 12.686 kb on - strandat 12.692 kb on + strandat 12.756 kb on - strandat 12.801 kb on + strandat 12.802 kb on - strandat 12.809 kb on + strandat 12.889 kb on + strand, within BPHYT_RS35890at 12.889 kb on + strand, within BPHYT_RS35890at 12.890 kb on - strand, within BPHYT_RS35890at 12.974 kb on - strand, within BPHYT_RS35890at 13.105 kb on - strand, within BPHYT_RS35890at 13.136 kb on + strand, within BPHYT_RS35890at 13.136 kb on + strand, within BPHYT_RS35890at 13.137 kb on - strand, within BPHYT_RS35890at 13.187 kb on + strand, within BPHYT_RS35890at 13.282 kb on + strand, within BPHYT_RS35890at 13.369 kb on + strand, within BPHYT_RS35890at 13.370 kb on - strand, within BPHYT_RS35890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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11,129 + +0.3
11,130 - +0.1
11,154 - +0.2
11,236 + BPHYT_RS35880 0.24 -0.7
11,237 - BPHYT_RS35880 0.25 -0.7
11,237 - BPHYT_RS35880 0.25 +0.2
11,244 + BPHYT_RS35880 0.27 -0.1
11,244 + BPHYT_RS35880 0.27 -0.3
11,245 - BPHYT_RS35880 0.27 +0.1
11,388 - BPHYT_RS35880 0.65 +1.3
11,388 - BPHYT_RS35880 0.65 -0.2
11,588 + +0.5
11,634 + +0.0
11,634 + +0.2
11,635 - -0.9
11,705 - -0.3
11,805 - -0.7
11,863 - -0.0
12,150 - BPHYT_RS35885 0.11 -1.2
12,244 + BPHYT_RS35885 0.44 -0.6
12,319 - BPHYT_RS35885 0.70 -0.9
12,463 + -0.4
12,595 + -0.4
12,597 + +0.4
12,597 + -0.2
12,597 + +1.0
12,598 - +0.1
12,616 - -0.1
12,681 + +0.5
12,685 + +0.2
12,685 + -0.5
12,685 + -0.8
12,686 - -1.3
12,686 - +0.2
12,692 + -0.1
12,756 - +0.1
12,801 + +0.2
12,802 - +0.0
12,809 + +0.2
12,889 + BPHYT_RS35890 0.14 -0.4
12,889 + BPHYT_RS35890 0.14 -0.3
12,890 - BPHYT_RS35890 0.14 +1.1
12,974 - BPHYT_RS35890 0.22 +0.0
13,105 - BPHYT_RS35890 0.35 +0.2
13,136 + BPHYT_RS35890 0.39 -0.0
13,136 + BPHYT_RS35890 0.39 -0.0
13,137 - BPHYT_RS35890 0.39 -0.3
13,187 + BPHYT_RS35890 0.44 +0.3
13,282 + BPHYT_RS35890 0.53 +0.3
13,369 + BPHYT_RS35890 0.62 +0.7
13,370 - BPHYT_RS35890 0.62 +0.1

Or see this region's nucleotide sequence